miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 218873 1.1 0.001445
Target:  5'- cCGCCGCGCUCGCCCACUAGCUCCAGCc -3'
miRNA:   3'- -GCGGCGCGAGCGGGUGAUCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 197361 0.86 0.064066
Target:  5'- cCGCCGCGCUgGCCCGCUgugagAGUUCCAGg -3'
miRNA:   3'- -GCGGCGCGAgCGGGUGA-----UCGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 221772 0.8 0.14897
Target:  5'- gCGCCGCGC-CGCCguCcucgaAGCUCCAGCg -3'
miRNA:   3'- -GCGGCGCGaGCGGguGa----UCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 191155 0.79 0.172013
Target:  5'- gCGCCGCGCUCGCCCgGCcccuCUCCAGa -3'
miRNA:   3'- -GCGGCGCGAGCGGG-UGauc-GAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 57409 0.79 0.178674
Target:  5'- gCGCCGUGCggUCGCCCACcgucucgcggacgGGCUCCuGCa -3'
miRNA:   3'- -GCGGCGCG--AGCGGGUGa------------UCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 226852 0.78 0.222585
Target:  5'- gCGCCGgGCagGCCCAUcagGGCgUCCAGCg -3'
miRNA:   3'- -GCGGCgCGagCGGGUGa--UCG-AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 175956 0.77 0.227763
Target:  5'- aGCuCGCGCacgucggCGCCCACguucAGCUUCAGCa -3'
miRNA:   3'- gCG-GCGCGa------GCGGGUGa---UCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 103023 0.77 0.2417
Target:  5'- aGCUGCGCUCGUCCGCccggucuauccagAGUUCCAGg -3'
miRNA:   3'- gCGGCGCGAGCGGGUGa------------UCGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 103532 0.77 0.249496
Target:  5'- aGCCGCGC-CaCCCGC-AGCUCCAGg -3'
miRNA:   3'- gCGGCGCGaGcGGGUGaUCGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 72282 0.77 0.249496
Target:  5'- cCGCCaGCGCcgcCGCCgCGCUGGCcgCCAGCc -3'
miRNA:   3'- -GCGG-CGCGa--GCGG-GUGAUCGa-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 144946 0.77 0.251761
Target:  5'- uCGCCGCGCUgGCUCGCgacgaagGGCUgcgcgacauccugagCCAGCg -3'
miRNA:   3'- -GCGGCGCGAgCGGGUGa------UCGA---------------GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 170682 0.77 0.260991
Target:  5'- aGCCGCGCUCG-CCGC-AGCUCgaGGCc -3'
miRNA:   3'- gCGGCGCGAGCgGGUGaUCGAGg-UCG- -5'
14607 5' -60.9 NC_003521.1 + 110342 0.76 0.272913
Target:  5'- gGCCGCGCUCGCgguguaGCUGGg-CCAGCa -3'
miRNA:   3'- gCGGCGCGAGCGgg----UGAUCgaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 92372 0.76 0.279037
Target:  5'- cCGUC-CGCUCGCCCGCUGccgucGCUCCgccGGCu -3'
miRNA:   3'- -GCGGcGCGAGCGGGUGAU-----CGAGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 128066 0.76 0.29161
Target:  5'- gCGCCGCGCgaugcCGCCCaugggcucgcGCUGGaagcgcgaCUCCAGCa -3'
miRNA:   3'- -GCGGCGCGa----GCGGG----------UGAUC--------GAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 120042 0.76 0.298062
Target:  5'- gGUCGCGCUCGCCCACc-GCg-CAGUg -3'
miRNA:   3'- gCGGCGCGAGCGGGUGauCGagGUCG- -5'
14607 5' -60.9 NC_003521.1 + 76391 0.75 0.304624
Target:  5'- gGCCGCGgUgGCgCUGCUAGCaCCAGCg -3'
miRNA:   3'- gCGGCGCgAgCG-GGUGAUCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 122113 0.75 0.304624
Target:  5'- uGCCGCGCcccUCGCCCAUgAGCcugcccuccaCCAGCg -3'
miRNA:   3'- gCGGCGCG---AGCGGGUGaUCGa---------GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 224727 0.75 0.311295
Target:  5'- cCGUgGUGCUCGCCgACgcaGGCggCCAGCg -3'
miRNA:   3'- -GCGgCGCGAGCGGgUGa--UCGa-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 80503 0.75 0.318078
Target:  5'- -aCCGCGC-CGCCCAC-GGCUCCgauGGCc -3'
miRNA:   3'- gcGGCGCGaGCGGGUGaUCGAGG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.