miRNA display CGI


Results 21 - 40 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 19670 0.68 0.696715
Target:  5'- uGCUGCGCUgggccgaGCCCaACUuucccaagaacguguGGCUCCuGCu -3'
miRNA:   3'- gCGGCGCGAg------CGGG-UGA---------------UCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 19828 0.72 0.441285
Target:  5'- aCGCUGgccaccuacaCGUUCGCCCGCgacguggAGCUgCAGCg -3'
miRNA:   3'- -GCGGC----------GCGAGCGGGUGa------UCGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 20398 0.75 0.338371
Target:  5'- aCGCCGUGCUCGUCUuucaGCUGGCcuucaccUUCGGCc -3'
miRNA:   3'- -GCGGCGCGAGCGGG----UGAUCG-------AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 21669 0.66 0.775636
Target:  5'- aCGCUGCGg-CGCCUGCUGGUacCCuGCc -3'
miRNA:   3'- -GCGGCGCgaGCGGGUGAUCGa-GGuCG- -5'
14607 5' -60.9 NC_003521.1 + 22103 0.66 0.78436
Target:  5'- aCGCCGCuuCUCGCCCGCc-GCcgCC-GCc -3'
miRNA:   3'- -GCGGCGc-GAGCGGGUGauCGa-GGuCG- -5'
14607 5' -60.9 NC_003521.1 + 24717 0.66 0.826016
Target:  5'- gCGCCGCGCUCaaccaguucauGCUCAUcaacaccgugUGGUUCgCGGUc -3'
miRNA:   3'- -GCGGCGCGAG-----------CGGGUG----------AUCGAG-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 25792 0.67 0.748813
Target:  5'- aCGCgGCuGCa-GCCCACcaucAGCUgCCAGCc -3'
miRNA:   3'- -GCGgCG-CGagCGGGUGa---UCGA-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 25835 0.67 0.766798
Target:  5'- aCGCCGCugGCUCGCaCCcccCUGGCcgCC-GCc -3'
miRNA:   3'- -GCGGCG--CGAGCG-GGu--GAUCGa-GGuCG- -5'
14607 5' -60.9 NC_003521.1 + 26015 0.68 0.681496
Target:  5'- uCGCCGCGCccggCGCCCGacGGCggugaagaggaCGGCg -3'
miRNA:   3'- -GCGGCGCGa---GCGGGUgaUCGag---------GUCG- -5'
14607 5' -60.9 NC_003521.1 + 26316 0.68 0.683404
Target:  5'- uGuCCGCGCUUccaggGCCgGCUcuccaggggaGGCUuCCAGCg -3'
miRNA:   3'- gC-GGCGCGAG-----CGGgUGA----------UCGA-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 27752 0.67 0.739679
Target:  5'- gCGCCGCGaugUCGuCCCgACggcgcAGCUCCucGCg -3'
miRNA:   3'- -GCGGCGCg--AGC-GGG-UGa----UCGAGGu-CG- -5'
14607 5' -60.9 NC_003521.1 + 27798 0.7 0.587335
Target:  5'- gGCC-CGCUCgGCCgGCUcGC-CCGGCg -3'
miRNA:   3'- gCGGcGCGAG-CGGgUGAuCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 28104 0.67 0.739679
Target:  5'- aGCagGCGCUCGCCCAagaucgaGGCccgacccaCCAGCc -3'
miRNA:   3'- gCGg-CGCGAGCGGGUga-----UCGa-------GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 28504 0.66 0.801437
Target:  5'- cCGUCGgGCUCGUCUACgccCUUCAGg -3'
miRNA:   3'- -GCGGCgCGAGCGGGUGaucGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 28761 0.67 0.748813
Target:  5'- gGCCGCGCcacCGCCCuagcGCUGcacuuucugcGCUCCgacaAGCc -3'
miRNA:   3'- gCGGCGCGa--GCGGG----UGAU----------CGAGG----UCG- -5'
14607 5' -60.9 NC_003521.1 + 30401 0.69 0.619988
Target:  5'- uGCCGuCGC-CGCCCACgccgaccacgcugcGGUcCCAGCu -3'
miRNA:   3'- gCGGC-GCGaGCGGGUGa-------------UCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 30963 0.66 0.817971
Target:  5'- aGCCagGCGCUCGgCaCGC-AGCagCAGCu -3'
miRNA:   3'- gCGG--CGCGAGCgG-GUGaUCGagGUCG- -5'
14607 5' -60.9 NC_003521.1 + 31054 0.66 0.809775
Target:  5'- -aCCGgaGCUCGCuCCACUgccAGCcgguacUCCGGCu -3'
miRNA:   3'- gcGGCg-CGAGCG-GGUGA---UCG------AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 33699 0.68 0.702393
Target:  5'- aCGCUGCaGCUggacucCGCCCAagcGCUCCcGCa -3'
miRNA:   3'- -GCGGCG-CGA------GCGGGUgauCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 35463 0.66 0.801437
Target:  5'- uGCCGCGCaggUCGUgCAC-GGCg-CAGCu -3'
miRNA:   3'- gCGGCGCG---AGCGgGUGaUCGagGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.