miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 240376 0.68 0.692921
Target:  5'- aCGCUGC-CUCaCCgGCUGGCUuaccgCCGGCu -3'
miRNA:   3'- -GCGGCGcGAGcGGgUGAUCGA-----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 240055 0.69 0.616137
Target:  5'- cCGCCGauggCGCCUGCuUGGCcUCCGGCg -3'
miRNA:   3'- -GCGGCgcgaGCGGGUG-AUCG-AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 239918 0.73 0.432814
Target:  5'- aCGCCGUGCgccagauggUGCCCAUggcuUGGUauUCCAGCu -3'
miRNA:   3'- -GCGGCGCGa--------GCGGGUG----AUCG--AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 239510 0.67 0.748813
Target:  5'- aGCCGCGCcacUCGCCgGCgccgUAGCggaaccauucgUCGGCg -3'
miRNA:   3'- gCGGCGCG---AGCGGgUG----AUCGa----------GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 234428 0.66 0.826016
Target:  5'- -cCCGuCGC-CGCCgCGgUAGCUgCGGCg -3'
miRNA:   3'- gcGGC-GCGaGCGG-GUgAUCGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 233405 0.66 0.826016
Target:  5'- uGCCGUcucgGCUCcuggcCCCGgUGGCUCCgacGGCc -3'
miRNA:   3'- gCGGCG----CGAGc----GGGUgAUCGAGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 233147 0.7 0.55879
Target:  5'- gGgCGgGUUCguGCCCGCcGGCUUCAGCg -3'
miRNA:   3'- gCgGCgCGAG--CGGGUGaUCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 233103 0.67 0.730463
Target:  5'- gCGCCGCcCUC-CCCACccaaaaagAGCcCCAGUg -3'
miRNA:   3'- -GCGGCGcGAGcGGGUGa-------UCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 232398 0.66 0.826016
Target:  5'- gCGCUG-GCUgCGCCUGCggcacGGCaacgCCAGCg -3'
miRNA:   3'- -GCGGCgCGA-GCGGGUGa----UCGa---GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 228460 0.71 0.503041
Target:  5'- gGCCggaggguaGCGaCUCGCCCACcacGC-CCAGCa -3'
miRNA:   3'- gCGG--------CGC-GAGCGGGUGau-CGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 226852 0.78 0.222585
Target:  5'- gCGCCGgGCagGCCCAUcagGGCgUCCAGCg -3'
miRNA:   3'- -GCGGCgCGagCGGGUGa--UCG-AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 226439 0.67 0.748813
Target:  5'- aCGCCGUagcgcgccaGCUCGUCCAgguugugGGCcaCCAGCa -3'
miRNA:   3'- -GCGGCG---------CGAGCGGGUga-----UCGa-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 225775 0.72 0.441285
Target:  5'- cCGCuCGCGCUCGCgCCGCUcgucagGGUgCCAGg -3'
miRNA:   3'- -GCG-GCGCGAGCG-GGUGA------UCGaGGUCg -5'
14607 5' -60.9 NC_003521.1 + 224979 0.69 0.625767
Target:  5'- uCGuaGCGgUCGCCCACcAGCaCCAcGCa -3'
miRNA:   3'- -GCggCGCgAGCGGGUGaUCGaGGU-CG- -5'
14607 5' -60.9 NC_003521.1 + 224938 0.7 0.568267
Target:  5'- gGCgCGUGCUgcCGCCCAUacagAGCaCCAGCu -3'
miRNA:   3'- gCG-GCGCGA--GCGGGUGa---UCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 224863 0.66 0.78436
Target:  5'- gGCCGUagcgcgccaGCUCGUCCAggugcUUGGCgcaCAGCa -3'
miRNA:   3'- gCGGCG---------CGAGCGGGU-----GAUCGag-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 224727 0.75 0.311295
Target:  5'- cCGUgGUGCUCGCCgACgcaGGCggCCAGCg -3'
miRNA:   3'- -GCGgCGCGAGCGGgUGa--UCGa-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 223823 0.66 0.781755
Target:  5'- cCGCCGCcaccGCgggCGCCUGCUGucccugcggcugcuGCUgCGGCu -3'
miRNA:   3'- -GCGGCG----CGa--GCGGGUGAU--------------CGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 223799 0.67 0.766798
Target:  5'- uGUCGuCGCUCcucuuCCCGCUguugcagcAGCUCCuGCu -3'
miRNA:   3'- gCGGC-GCGAGc----GGGUGA--------UCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 223223 0.67 0.757855
Target:  5'- aCGCCGCGa-CGCCU---GGCgcgUCCAGCc -3'
miRNA:   3'- -GCGGCGCgaGCGGGugaUCG---AGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.