miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 197361 0.86 0.064066
Target:  5'- cCGCCGCGCUgGCCCGCUgugagAGUUCCAGg -3'
miRNA:   3'- -GCGGCGCGAgCGGGUGA-----UCGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 39691 0.73 0.432814
Target:  5'- aCGCCGUGCgccagauggUGCCCAUggcuUGGUauUCCAGCu -3'
miRNA:   3'- -GCGGCGCGa--------GCGGGUG----AUCG--AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 19828 0.72 0.441285
Target:  5'- aCGCUGgccaccuacaCGUUCGCCCGCgacguggAGCUgCAGCg -3'
miRNA:   3'- -GCGGC----------GCGAGCGGGUGa------UCGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 234428 0.66 0.826016
Target:  5'- -cCCGuCGC-CGCCgCGgUAGCUgCGGCg -3'
miRNA:   3'- gcGGC-GCGaGCGG-GUgAUCGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 103532 0.77 0.249496
Target:  5'- aGCCGCGC-CaCCCGC-AGCUCCAGg -3'
miRNA:   3'- gCGGCGCGaGcGGGUGaUCGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 72282 0.77 0.249496
Target:  5'- cCGCCaGCGCcgcCGCCgCGCUGGCcgCCAGCc -3'
miRNA:   3'- -GCGG-CGCGa--GCGG-GUGAUCGa-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 110342 0.76 0.272913
Target:  5'- gGCCGCGCUCGCgguguaGCUGGg-CCAGCa -3'
miRNA:   3'- gCGGCGCGAGCGgg----UGAUCgaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 76391 0.75 0.304624
Target:  5'- gGCCGCGgUgGCgCUGCUAGCaCCAGCg -3'
miRNA:   3'- gCGGCGCgAgCG-GGUGAUCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 20398 0.75 0.338371
Target:  5'- aCGCCGUGCUCGUCUuucaGCUGGCcuucaccUUCGGCc -3'
miRNA:   3'- -GCGGCGCGAGCGGG----UGAUCG-------AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 153449 0.73 0.421944
Target:  5'- cCGCCGC-CUCGUCCuccacCUcggccuccuccucgGGCUCCGGCu -3'
miRNA:   3'- -GCGGCGcGAGCGGGu----GA--------------UCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 138011 0.74 0.361086
Target:  5'- gCGCCGCuacuuGCUgcCGCCCgaGCUGGCggccgCCGGCg -3'
miRNA:   3'- -GCGGCG-----CGA--GCGGG--UGAUCGa----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 92402 0.75 0.331974
Target:  5'- cCGCCgGCGCggcCGCCCGCaccaUGGCUCCcucGCa -3'
miRNA:   3'- -GCGG-CGCGa--GCGGGUG----AUCGAGGu--CG- -5'
14607 5' -60.9 NC_003521.1 + 221772 0.8 0.14897
Target:  5'- gCGCCGCGC-CGCCguCcucgaAGCUCCAGCg -3'
miRNA:   3'- -GCGGCGCGaGCGGguGa----UCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 16291 0.74 0.368636
Target:  5'- gCGCCGUGggUGCCUACcGGC-CCGGCg -3'
miRNA:   3'- -GCGGCGCgaGCGGGUGaUCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 175956 0.77 0.227763
Target:  5'- aGCuCGCGCacgucggCGCCCACguucAGCUUCAGCa -3'
miRNA:   3'- gCG-GCGCGa------GCGGGUGa---UCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 122113 0.75 0.304624
Target:  5'- uGCCGCGCcccUCGCCCAUgAGCcugcccuccaCCAGCg -3'
miRNA:   3'- gCGGCGCG---AGCGGGUGaUCGa---------GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 86538 0.74 0.376294
Target:  5'- aCGCCGUGC-CGCCCc---GCUCCAcGCg -3'
miRNA:   3'- -GCGGCGCGaGCGGGugauCGAGGU-CG- -5'
14607 5' -60.9 NC_003521.1 + 148819 0.73 0.432814
Target:  5'- cCGCCGCGcCUCG-CCGCUcccGCUCCGuucGCg -3'
miRNA:   3'- -GCGGCGC-GAGCgGGUGAu--CGAGGU---CG- -5'
14607 5' -60.9 NC_003521.1 + 103023 0.77 0.2417
Target:  5'- aGCUGCGCUCGUCCGCccggucuauccagAGUUCCAGg -3'
miRNA:   3'- gCGGCGCGAGCGGGUGa------------UCGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 170682 0.77 0.260991
Target:  5'- aGCCGCGCUCG-CCGC-AGCUCgaGGCc -3'
miRNA:   3'- gCGGCGCGAGCgGGUGaUCGAGg-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.