miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 3' -64 NC_003521.1 + 219818 1.08 0.001272
Target:  5'- cCGCCUCCAGGCCCUCCGAGACCCGGAu -3'
miRNA:   3'- -GCGGAGGUCCGGGAGGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 153059 0.79 0.135252
Target:  5'- gGCCcCCAGGCCUccuccgccgCCGGGGCCCGGGc -3'
miRNA:   3'- gCGGaGGUCCGGGa--------GGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 223592 0.78 0.155756
Target:  5'- gCGCCUCCAccucGG-CCUCCGAGACCuCGGc -3'
miRNA:   3'- -GCGGAGGU----CCgGGAGGCUCUGG-GCCu -5'
14608 3' -64 NC_003521.1 + 124927 0.77 0.183202
Target:  5'- aGCUgacCCAGGCCUUCCcGGGCCUGGAc -3'
miRNA:   3'- gCGGa--GGUCCGGGAGGcUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 203411 0.75 0.245577
Target:  5'- aCGCCUcCCAGGCCgUCgCacaAGGCCCGGGc -3'
miRNA:   3'- -GCGGA-GGUCCGGgAG-Gc--UCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 234452 0.73 0.31129
Target:  5'- gCGCCccUCCGcgaccccgaccGGcCCCUCUGGGAUCCGGAu -3'
miRNA:   3'- -GCGG--AGGU-----------CC-GGGAGGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 118122 0.72 0.352423
Target:  5'- cCGCCUCCAGcCCCgCCGAGACgcccaugaucaCCGGc -3'
miRNA:   3'- -GCGGAGGUCcGGGaGGCUCUG-----------GGCCu -5'
14608 3' -64 NC_003521.1 + 212950 0.72 0.374388
Target:  5'- cCGCCUCCaugcggucgAGGUCCUCCGugccguuacgAGACCgCGGc -3'
miRNA:   3'- -GCGGAGG---------UCCGGGAGGC----------UCUGG-GCCu -5'
14608 3' -64 NC_003521.1 + 56444 0.71 0.392615
Target:  5'- cCGCCUCguGGCCCaggUCCGAGaggcgccgcgccacgGCCCGc- -3'
miRNA:   3'- -GCGGAGguCCGGG---AGGCUC---------------UGGGCcu -5'
14608 3' -64 NC_003521.1 + 18190 0.71 0.397261
Target:  5'- gCGCCUgCcGGCCCUUCGAucacaugucGGCCgCGGAg -3'
miRNA:   3'- -GCGGAgGuCCGGGAGGCU---------CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 61636 0.71 0.410615
Target:  5'- gCGCCUCC-GGCUUUCUGGGACCgcacuaccgcaugcUGGAa -3'
miRNA:   3'- -GCGGAGGuCCGGGAGGCUCUGG--------------GCCU- -5'
14608 3' -64 NC_003521.1 + 226917 0.71 0.413001
Target:  5'- gGCCUCCGcGGCCCccuccgcgCCGGGcccCCCGGc -3'
miRNA:   3'- gCGGAGGU-CCGGGa-------GGCUCu--GGGCCu -5'
14608 3' -64 NC_003521.1 + 196983 0.7 0.437316
Target:  5'- gCGCCUgugaCGGGCCCgcggCCGGcggcggcuGACCCGGc -3'
miRNA:   3'- -GCGGAg---GUCCGGGa---GGCU--------CUGGGCCu -5'
14608 3' -64 NC_003521.1 + 84703 0.7 0.437316
Target:  5'- -aCCUCCAGGCcggCCUCCG-GugCCaGGAu -3'
miRNA:   3'- gcGGAGGUCCG---GGAGGCuCugGG-CCU- -5'
14608 3' -64 NC_003521.1 + 164501 0.7 0.445603
Target:  5'- uCGCCUCCGcaGCugucgccgccaCCUCCGcugccGGACCCGGAc -3'
miRNA:   3'- -GCGGAGGUc-CG-----------GGAGGC-----UCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 204396 0.7 0.453976
Target:  5'- uCGUCUCCGcGGCCCUCCGA---CCGcGAa -3'
miRNA:   3'- -GCGGAGGU-CCGGGAGGCUcugGGC-CU- -5'
14608 3' -64 NC_003521.1 + 43653 0.7 0.453976
Target:  5'- cCGCCUCCA-GCCCUgCC-AGGCCCagcgcGGAa -3'
miRNA:   3'- -GCGGAGGUcCGGGA-GGcUCUGGG-----CCU- -5'
14608 3' -64 NC_003521.1 + 210901 0.7 0.462434
Target:  5'- gGCCgucgCCAGGCCCU-UGAcGGCCaCGGGu -3'
miRNA:   3'- gCGGa---GGUCCGGGAgGCU-CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 137856 0.7 0.470974
Target:  5'- cCGCCccgCCAGaGCCCcgacgcCCGAGcGCCUGGAc -3'
miRNA:   3'- -GCGGa--GGUC-CGGGa-----GGCUC-UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 112678 0.7 0.479593
Target:  5'- uGCCUgCAGGCCUucgCCGAG-CgCGGGc -3'
miRNA:   3'- gCGGAgGUCCGGGa--GGCUCuGgGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.