miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 3' -64 NC_003521.1 + 217723 0.68 0.587973
Target:  5'- uGCCgUCCcGGCCCcCCGcccGGCCaCGGAc -3'
miRNA:   3'- gCGG-AGGuCCGGGaGGCu--CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 181122 0.69 0.491788
Target:  5'- gCGCCaccaggcgacccgagUCCAGGUUCUCCaGGAUCUGGGu -3'
miRNA:   3'- -GCGG---------------AGGUCCGGGAGGcUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 204118 0.69 0.514804
Target:  5'- gCGCCUCCAccugcucgGGCCaggcgCCGGaGCCCGGc -3'
miRNA:   3'- -GCGGAGGU--------CCGGga---GGCUcUGGGCCu -5'
14608 3' -64 NC_003521.1 + 92390 0.68 0.551019
Target:  5'- cCGUcgCUCCGccGGCuCCUCCGGGucugguaaACCCGGGu -3'
miRNA:   3'- -GCG--GAGGU--CCG-GGAGGCUC--------UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 140824 0.68 0.560199
Target:  5'- gCGCUUCUcGGCCUUCCGucacgacGugCUGGAg -3'
miRNA:   3'- -GCGGAGGuCCGGGAGGCu------CugGGCCU- -5'
14608 3' -64 NC_003521.1 + 119776 0.68 0.569422
Target:  5'- gGCCUCCAGGCugcgguccacCUUCCGGcGCCagCGGGg -3'
miRNA:   3'- gCGGAGGUCCG----------GGAGGCUcUGG--GCCU- -5'
14608 3' -64 NC_003521.1 + 192407 0.68 0.569422
Target:  5'- uGCUguUCCAGcGCCUcgCCGAGACUCGaGGg -3'
miRNA:   3'- gCGG--AGGUC-CGGGa-GGCUCUGGGC-CU- -5'
14608 3' -64 NC_003521.1 + 5788 0.68 0.578681
Target:  5'- gGCCUCaugagAGGaguacggCCUCCGAGACCUaGGGg -3'
miRNA:   3'- gCGGAGg----UCCg------GGAGGCUCUGGG-CCU- -5'
14608 3' -64 NC_003521.1 + 202444 0.68 0.578681
Target:  5'- gGCCcuacgcCCAGGCCCUgCuAGugCUGGAc -3'
miRNA:   3'- gCGGa-----GGUCCGGGAgGcUCugGGCCU- -5'
14608 3' -64 NC_003521.1 + 137856 0.7 0.470974
Target:  5'- cCGCCccgCCAGaGCCCcgacgcCCGAGcGCCUGGAc -3'
miRNA:   3'- -GCGGa--GGUC-CGGGa-----GGCUC-UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 210901 0.7 0.462434
Target:  5'- gGCCgucgCCAGGCCCU-UGAcGGCCaCGGGu -3'
miRNA:   3'- gCGGa---GGUCCGGGAgGCU-CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 204396 0.7 0.453976
Target:  5'- uCGUCUCCGcGGCCCUCCGA---CCGcGAa -3'
miRNA:   3'- -GCGGAGGU-CCGGGAGGCUcugGGC-CU- -5'
14608 3' -64 NC_003521.1 + 153059 0.79 0.135252
Target:  5'- gGCCcCCAGGCCUccuccgccgCCGGGGCCCGGGc -3'
miRNA:   3'- gCGGaGGUCCGGGa--------GGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 223592 0.78 0.155756
Target:  5'- gCGCCUCCAccucGG-CCUCCGAGACCuCGGc -3'
miRNA:   3'- -GCGGAGGU----CCgGGAGGCUCUGG-GCCu -5'
14608 3' -64 NC_003521.1 + 203411 0.75 0.245577
Target:  5'- aCGCCUcCCAGGCCgUCgCacaAGGCCCGGGc -3'
miRNA:   3'- -GCGGA-GGUCCGGgAG-Gc--UCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 118122 0.72 0.352423
Target:  5'- cCGCCUCCAGcCCCgCCGAGACgcccaugaucaCCGGc -3'
miRNA:   3'- -GCGGAGGUCcGGGaGGCUCUG-----------GGCCu -5'
14608 3' -64 NC_003521.1 + 56444 0.71 0.392615
Target:  5'- cCGCCUCguGGCCCaggUCCGAGaggcgccgcgccacgGCCCGc- -3'
miRNA:   3'- -GCGGAGguCCGGG---AGGCUC---------------UGGGCcu -5'
14608 3' -64 NC_003521.1 + 226917 0.71 0.413001
Target:  5'- gGCCUCCGcGGCCCccuccgcgCCGGGcccCCCGGc -3'
miRNA:   3'- gCGGAGGU-CCGGGa-------GGCUCu--GGGCCu -5'
14608 3' -64 NC_003521.1 + 84703 0.7 0.437316
Target:  5'- -aCCUCCAGGCcggCCUCCG-GugCCaGGAu -3'
miRNA:   3'- gcGGAGGUCCG---GGAGGCuCugGG-CCU- -5'
14608 3' -64 NC_003521.1 + 164501 0.7 0.445603
Target:  5'- uCGCCUCCGcaGCugucgccgccaCCUCCGcugccGGACCCGGAc -3'
miRNA:   3'- -GCGGAGGUc-CG-----------GGAGGC-----UCUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.