miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 3' -64 NC_003521.1 + 124927 0.77 0.183202
Target:  5'- aGCUgacCCAGGCCUUCCcGGGCCUGGAc -3'
miRNA:   3'- gCGGa--GGUCCGGGAGGcUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 153182 0.68 0.569422
Target:  5'- gCGCCUCCA-GCCUgugCGAGGCCUGcGGc -3'
miRNA:   3'- -GCGGAGGUcCGGGag-GCUCUGGGC-CU- -5'
14608 3' -64 NC_003521.1 + 2216 0.68 0.578681
Target:  5'- gGCCcuacgcCCAGGCCCUgCuAGugCUGGAc -3'
miRNA:   3'- gCGGa-----GGUCCGGGAgGcUCugGGCCU- -5'
14608 3' -64 NC_003521.1 + 148892 0.66 0.710003
Target:  5'- cCGCCgCCGGGUCCaccgcaucgccgccgCCGuccuGGAUCCGGGg -3'
miRNA:   3'- -GCGGaGGUCCGGGa--------------GGC----UCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 61636 0.71 0.410615
Target:  5'- gCGCCUCC-GGCUUUCUGGGACCgcacuaccgcaugcUGGAa -3'
miRNA:   3'- -GCGGAGGuCCGGGAGGCUCUGG--------------GCCU- -5'
14608 3' -64 NC_003521.1 + 196983 0.7 0.437316
Target:  5'- gCGCCUgugaCGGGCCCgcggCCGGcggcggcuGACCCGGc -3'
miRNA:   3'- -GCGGAg---GUCCGGGa---GGCU--------CUGGGCCu -5'
14608 3' -64 NC_003521.1 + 112678 0.7 0.479593
Target:  5'- uGCCUgCAGGCCUucgCCGAG-CgCGGGc -3'
miRNA:   3'- gCGGAgGUCCGGGa--GGCUCuGgGCCU- -5'
14608 3' -64 NC_003521.1 + 209926 0.7 0.479593
Target:  5'- uCGCCUgCCGcaguucagcucGGCCCUCUcGGACgCGGAa -3'
miRNA:   3'- -GCGGA-GGU-----------CCGGGAGGcUCUGgGCCU- -5'
14608 3' -64 NC_003521.1 + 234971 0.69 0.521076
Target:  5'- uGCCcgcgCCcggaucgcauaaaaGGGCCCcggucgCCGGGACCCGGc -3'
miRNA:   3'- gCGGa---GG--------------UCCGGGa-----GGCUCUGGGCCu -5'
14608 3' -64 NC_003521.1 + 236390 0.68 0.551019
Target:  5'- uCGCCUCgGGcGUUCUCCGGGAgUCGcGAa -3'
miRNA:   3'- -GCGGAGgUC-CGGGAGGCUCUgGGC-CU- -5'
14608 3' -64 NC_003521.1 + 109773 0.69 0.523773
Target:  5'- cCGCgUCCgAGGCCCgccgCCGccGCCCaGGAg -3'
miRNA:   3'- -GCGgAGG-UCCGGGa---GGCucUGGG-CCU- -5'
14608 3' -64 NC_003521.1 + 17464 0.69 0.514804
Target:  5'- uCGCUgcugaCCaAGGCCgCcgCCGAGGCCUGGGg -3'
miRNA:   3'- -GCGGa----GG-UCCGG-Ga-GGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 234452 0.73 0.31129
Target:  5'- gCGCCccUCCGcgaccccgaccGGcCCCUCUGGGAUCCGGAu -3'
miRNA:   3'- -GCGG--AGGU-----------CC-GGGAGGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 195533 0.69 0.532801
Target:  5'- cCGgCUCCuGGCCCagCGGcGCCCGGu -3'
miRNA:   3'- -GCgGAGGuCCGGGagGCUcUGGGCCu -5'
14608 3' -64 NC_003521.1 + 212950 0.72 0.374388
Target:  5'- cCGCCUCCaugcggucgAGGUCCUCCGugccguuacgAGACCgCGGc -3'
miRNA:   3'- -GCGGAGG---------UCCGGGAGGC----------UCUGG-GCCu -5'
14608 3' -64 NC_003521.1 + 176739 0.69 0.488289
Target:  5'- cCGCCUCCAGGCCgggCUCgcacAGACCCa-- -3'
miRNA:   3'- -GCGGAGGUCCGG---GAGgc--UCUGGGccu -5'
14608 3' -64 NC_003521.1 + 138106 0.69 0.532801
Target:  5'- aCGUCUUCuGcGCCgucuuCUCCGAGACCUGGc -3'
miRNA:   3'- -GCGGAGGuC-CGG-----GAGGCUCUGGGCCu -5'
14608 3' -64 NC_003521.1 + 152161 0.68 0.573121
Target:  5'- cCGCCggcCCAccgaccuggcGGCCCUCUgcgccucgcugggcuGuGACCCGGAc -3'
miRNA:   3'- -GCGGa--GGU----------CCGGGAGG---------------CuCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 18190 0.71 0.397261
Target:  5'- gCGCCUgCcGGCCCUUCGAucacaugucGGCCgCGGAg -3'
miRNA:   3'- -GCGGAgGuCCGGGAGGCU---------CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 43653 0.7 0.453976
Target:  5'- cCGCCUCCA-GCCCUgCC-AGGCCCagcgcGGAa -3'
miRNA:   3'- -GCGGAGGUcCGGGA-GGcUCUGGG-----CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.