miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 3' -64 NC_003521.1 + 236390 0.68 0.551019
Target:  5'- uCGCCUCgGGcGUUCUCCGGGAgUCGcGAa -3'
miRNA:   3'- -GCGGAGgUC-CGGGAGGCUCUgGGC-CU- -5'
14608 3' -64 NC_003521.1 + 92390 0.68 0.551019
Target:  5'- cCGUcgCUCCGccGGCuCCUCCGGGucugguaaACCCGGGu -3'
miRNA:   3'- -GCG--GAGGU--CCG-GGAGGCUC--------UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 138106 0.69 0.532801
Target:  5'- aCGUCUUCuGcGCCgucuuCUCCGAGACCUGGc -3'
miRNA:   3'- -GCGGAGGuC-CGG-----GAGGCUCUGGGCCu -5'
14608 3' -64 NC_003521.1 + 195533 0.69 0.532801
Target:  5'- cCGgCUCCuGGCCCagCGGcGCCCGGu -3'
miRNA:   3'- -GCgGAGGuCCGGGagGCUcUGGGCCu -5'
14608 3' -64 NC_003521.1 + 109773 0.69 0.523773
Target:  5'- cCGCgUCCgAGGCCCgccgCCGccGCCCaGGAg -3'
miRNA:   3'- -GCGgAGG-UCCGGGa---GGCucUGGG-CCU- -5'
14608 3' -64 NC_003521.1 + 123340 0.69 0.523773
Target:  5'- cCGCCggaCAGGCCCgucgCCGGGugUggaGGAg -3'
miRNA:   3'- -GCGGag-GUCCGGGa---GGCUCugGg--CCU- -5'
14608 3' -64 NC_003521.1 + 234971 0.69 0.521076
Target:  5'- uGCCcgcgCCcggaucgcauaaaaGGGCCCcggucgCCGGGACCCGGc -3'
miRNA:   3'- gCGGa---GG--------------UCCGGGa-----GGCUCUGGGCCu -5'
14608 3' -64 NC_003521.1 + 204118 0.69 0.514804
Target:  5'- gCGCCUCCAccugcucgGGCCaggcgCCGGaGCCCGGc -3'
miRNA:   3'- -GCGGAGGU--------CCGGga---GGCUcUGGGCCu -5'
14608 3' -64 NC_003521.1 + 17464 0.69 0.514804
Target:  5'- uCGCUgcugaCCaAGGCCgCcgCCGAGGCCUGGGg -3'
miRNA:   3'- -GCGGa----GG-UCCGG-Ga-GGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 181122 0.69 0.491788
Target:  5'- gCGCCaccaggcgacccgagUCCAGGUUCUCCaGGAUCUGGGu -3'
miRNA:   3'- -GCGG---------------AGGUCCGGGAGGcUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 176739 0.69 0.488289
Target:  5'- cCGCCUCCAGGCCgggCUCgcacAGACCCa-- -3'
miRNA:   3'- -GCGGAGGUCCGG---GAGgc--UCUGGGccu -5'
14608 3' -64 NC_003521.1 + 209926 0.7 0.479593
Target:  5'- uCGCCUgCCGcaguucagcucGGCCCUCUcGGACgCGGAa -3'
miRNA:   3'- -GCGGA-GGU-----------CCGGGAGGcUCUGgGCCU- -5'
14608 3' -64 NC_003521.1 + 112678 0.7 0.479593
Target:  5'- uGCCUgCAGGCCUucgCCGAG-CgCGGGc -3'
miRNA:   3'- gCGGAgGUCCGGGa--GGCUCuGgGCCU- -5'
14608 3' -64 NC_003521.1 + 137856 0.7 0.470974
Target:  5'- cCGCCccgCCAGaGCCCcgacgcCCGAGcGCCUGGAc -3'
miRNA:   3'- -GCGGa--GGUC-CGGGa-----GGCUC-UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 210901 0.7 0.462434
Target:  5'- gGCCgucgCCAGGCCCU-UGAcGGCCaCGGGu -3'
miRNA:   3'- gCGGa---GGUCCGGGAgGCU-CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 43653 0.7 0.453976
Target:  5'- cCGCCUCCA-GCCCUgCC-AGGCCCagcgcGGAa -3'
miRNA:   3'- -GCGGAGGUcCGGGA-GGcUCUGGG-----CCU- -5'
14608 3' -64 NC_003521.1 + 204396 0.7 0.453976
Target:  5'- uCGUCUCCGcGGCCCUCCGA---CCGcGAa -3'
miRNA:   3'- -GCGGAGGU-CCGGGAGGCUcugGGC-CU- -5'
14608 3' -64 NC_003521.1 + 164501 0.7 0.445603
Target:  5'- uCGCCUCCGcaGCugucgccgccaCCUCCGcugccGGACCCGGAc -3'
miRNA:   3'- -GCGGAGGUc-CG-----------GGAGGC-----UCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 196983 0.7 0.437316
Target:  5'- gCGCCUgugaCGGGCCCgcggCCGGcggcggcuGACCCGGc -3'
miRNA:   3'- -GCGGAg---GUCCGGGa---GGCU--------CUGGGCCu -5'
14608 3' -64 NC_003521.1 + 84703 0.7 0.437316
Target:  5'- -aCCUCCAGGCcggCCUCCG-GugCCaGGAu -3'
miRNA:   3'- gcGGAGGUCCG---GGAGGCuCugGG-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.