miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 3' -64 NC_003521.1 + 127235 0.67 0.644092
Target:  5'- cCGCCcCCGuuGCCC-CCGAGGCCCa-- -3'
miRNA:   3'- -GCGGaGGUc-CGGGaGGCUCUGGGccu -5'
14608 3' -64 NC_003521.1 + 34993 0.67 0.634724
Target:  5'- gGUCUCCGGGgCCagCGAGcgcuugcgucguGCCCGGc -3'
miRNA:   3'- gCGGAGGUCCgGGagGCUC------------UGGGCCu -5'
14608 3' -64 NC_003521.1 + 142267 0.67 0.634724
Target:  5'- gGCCgacUCGGGCUCgggCUGGGACCCGc- -3'
miRNA:   3'- gCGGa--GGUCCGGGa--GGCUCUGGGCcu -5'
14608 3' -64 NC_003521.1 + 73483 0.67 0.634724
Target:  5'- uCGUCUUCuacgAGGCcgagcuCCUCCucGACCCGGAg -3'
miRNA:   3'- -GCGGAGG----UCCG------GGAGGcuCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 228062 0.67 0.625353
Target:  5'- gCGCacgCgCGGGUCCcagcucacgUCCGAGGCgCCGGAa -3'
miRNA:   3'- -GCGga-G-GUCCGGG---------AGGCUCUG-GGCCU- -5'
14608 3' -64 NC_003521.1 + 115880 0.67 0.625353
Target:  5'- gGCCgcguuaaagUCCAGGCCCgggaAGGCCUGGGu -3'
miRNA:   3'- gCGG---------AGGUCCGGGaggcUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 174508 0.67 0.625353
Target:  5'- gGCCUCCAcGGCuuggaucaCCUCCGGGucggcuguGCCCGc- -3'
miRNA:   3'- gCGGAGGU-CCG--------GGAGGCUC--------UGGGCcu -5'
14608 3' -64 NC_003521.1 + 204354 0.67 0.606631
Target:  5'- uCGuCCUCC-GGUCCUUCGucgcGGCCCaGGAg -3'
miRNA:   3'- -GC-GGAGGuCCGGGAGGCu---CUGGG-CCU- -5'
14608 3' -64 NC_003521.1 + 85485 0.67 0.597291
Target:  5'- uGCCggugCCcGcGCCCccgCCGGGACCCGcGGu -3'
miRNA:   3'- gCGGa---GGuC-CGGGa--GGCUCUGGGC-CU- -5'
14608 3' -64 NC_003521.1 + 217723 0.68 0.587973
Target:  5'- uGCCgUCCcGGCCCcCCGcccGGCCaCGGAc -3'
miRNA:   3'- gCGG-AGGuCCGGGaGGCu--CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 20982 0.68 0.587973
Target:  5'- uGCUcUCGGGCCCgcacuggaUCCGGGuCUCGGAg -3'
miRNA:   3'- gCGGaGGUCCGGG--------AGGCUCuGGGCCU- -5'
14608 3' -64 NC_003521.1 + 24105 0.68 0.587973
Target:  5'- cCGCCaaUCCGGGCCg-CCaGAGACguUCGGAg -3'
miRNA:   3'- -GCGG--AGGUCCGGgaGG-CUCUG--GGCCU- -5'
14608 3' -64 NC_003521.1 + 2216 0.68 0.578681
Target:  5'- gGCCcuacgcCCAGGCCCUgCuAGugCUGGAc -3'
miRNA:   3'- gCGGa-----GGUCCGGGAgGcUCugGGCCU- -5'
14608 3' -64 NC_003521.1 + 5788 0.68 0.578681
Target:  5'- gGCCUCaugagAGGaguacggCCUCCGAGACCUaGGGg -3'
miRNA:   3'- gCGGAGg----UCCg------GGAGGCUCUGGG-CCU- -5'
14608 3' -64 NC_003521.1 + 202444 0.68 0.578681
Target:  5'- gGCCcuacgcCCAGGCCCUgCuAGugCUGGAc -3'
miRNA:   3'- gCGGa-----GGUCCGGGAgGcUCugGGCCU- -5'
14608 3' -64 NC_003521.1 + 152161 0.68 0.573121
Target:  5'- cCGCCggcCCAccgaccuggcGGCCCUCUgcgccucgcugggcuGuGACCCGGAc -3'
miRNA:   3'- -GCGGa--GGU----------CCGGGAGG---------------CuCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 192407 0.68 0.569422
Target:  5'- uGCUguUCCAGcGCCUcgCCGAGACUCGaGGg -3'
miRNA:   3'- gCGG--AGGUC-CGGGa-GGCUCUGGGC-CU- -5'
14608 3' -64 NC_003521.1 + 119776 0.68 0.569422
Target:  5'- gGCCUCCAGGCugcgguccacCUUCCGGcGCCagCGGGg -3'
miRNA:   3'- gCGGAGGUCCG----------GGAGGCUcUGG--GCCU- -5'
14608 3' -64 NC_003521.1 + 153182 0.68 0.569422
Target:  5'- gCGCCUCCA-GCCUgugCGAGGCCUGcGGc -3'
miRNA:   3'- -GCGGAGGUcCGGGag-GCUCUGGGC-CU- -5'
14608 3' -64 NC_003521.1 + 140824 0.68 0.560199
Target:  5'- gCGCUUCUcGGCCUUCCGucacgacGugCUGGAg -3'
miRNA:   3'- -GCGGAGGuCCGGGAGGCu------CugGGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.