miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 5' -54.9 NC_003521.1 + 113363 0.68 0.932951
Target:  5'- cGGgCCGGGGGCGaggagGAGGGUuaCGGCGg- -3'
miRNA:   3'- -CCgGGCUCUCGUa----CUCCUA--GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 92147 0.68 0.932951
Target:  5'- uGGcCCCGAcGAGCGUGuAGuGGUUGGCGg- -3'
miRNA:   3'- -CC-GGGCU-CUCGUAC-UC-CUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 184131 0.68 0.927878
Target:  5'- cGG-CCGAGAcgGCGUGuuGAUCGuGCAUGg -3'
miRNA:   3'- -CCgGGCUCU--CGUACucCUAGU-CGUAC- -5'
14608 5' -54.9 NC_003521.1 + 168196 0.68 0.922575
Target:  5'- uGGCUCGAcAGCuugGGGGAUCAGaCGg- -3'
miRNA:   3'- -CCGGGCUcUCGua-CUCCUAGUC-GUac -5'
14608 5' -54.9 NC_003521.1 + 39455 0.68 0.914762
Target:  5'- cGGCgCCGAGGGCcgcgucgaaggauUGcGGAUCGGCGc- -3'
miRNA:   3'- -CCG-GGCUCUCGu------------ACuCCUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 214917 0.69 0.911275
Target:  5'- aGGUgCG-GAGCGUGAGGAUUcuuaauaccaugAGCAg- -3'
miRNA:   3'- -CCGgGCuCUCGUACUCCUAG------------UCGUac -5'
14608 5' -54.9 NC_003521.1 + 127963 0.69 0.911275
Target:  5'- aGCCgCGGGAGCAgcUGGGGcagcUCGGcCAUGa -3'
miRNA:   3'- cCGG-GCUCUCGU--ACUCCu---AGUC-GUAC- -5'
14608 5' -54.9 NC_003521.1 + 115896 0.69 0.905282
Target:  5'- aGGCCCGGGAagGCcu--GGGUCAGCu-- -3'
miRNA:   3'- -CCGGGCUCU--CGuacuCCUAGUCGuac -5'
14608 5' -54.9 NC_003521.1 + 34398 0.69 0.899062
Target:  5'- uGGCgCucGGGCcagGUGAGGAUCAGC-UGg -3'
miRNA:   3'- -CCGgGcuCUCG---UACUCCUAGUCGuAC- -5'
14608 5' -54.9 NC_003521.1 + 151615 0.69 0.899062
Target:  5'- gGGCCCGGcAGguUGGGGAagUUGGCGUu -3'
miRNA:   3'- -CCGGGCUcUCguACUCCU--AGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 196963 0.69 0.897152
Target:  5'- cGGCCCGGGAGCcggccggggcgccuGUGAcGGGcccgCGGCcgGc -3'
miRNA:   3'- -CCGGGCUCUCG--------------UACU-CCUa---GUCGuaC- -5'
14608 5' -54.9 NC_003521.1 + 113590 0.69 0.892617
Target:  5'- gGGCCuCGGGGGCAacGGGggCGGCGc- -3'
miRNA:   3'- -CCGG-GCUCUCGUacUCCuaGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 199624 0.69 0.885953
Target:  5'- gGGCaggauCGAGAGCGUGAGGA--AGUugGUGg -3'
miRNA:   3'- -CCGg----GCUCUCGUACUCCUagUCG--UAC- -5'
14608 5' -54.9 NC_003521.1 + 87348 0.69 0.885953
Target:  5'- cGGCCCGAgccgGAGCccGAGGAggaGGCcgagGUGg -3'
miRNA:   3'- -CCGGGCU----CUCGuaCUCCUag-UCG----UAC- -5'
14608 5' -54.9 NC_003521.1 + 108118 0.7 0.867619
Target:  5'- gGGCauGGGGGCuacggucacguuguUGAGGAUCAGCGg- -3'
miRNA:   3'- -CCGggCUCUCGu-------------ACUCCUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 39322 0.7 0.864674
Target:  5'- cGGCgUCGcGGGCGgcuAGGGUCAGCGUGu -3'
miRNA:   3'- -CCG-GGCuCUCGUac-UCCUAGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 198969 0.7 0.864674
Target:  5'- aGGCgCGAGAGCGUGcuGAccgucagccUCAGCGUc -3'
miRNA:   3'- -CCGgGCUCUCGUACucCU---------AGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 239549 0.7 0.864674
Target:  5'- cGGCgUCGcGGGCGgcuAGGGUCAGCGUGu -3'
miRNA:   3'- -CCG-GGCuCUCGUac-UCCUAGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 236239 0.7 0.857169
Target:  5'- cGGCCCGuuAGCAaaccgGAGGc-CGGCGUGu -3'
miRNA:   3'- -CCGGGCucUCGUa----CUCCuaGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 125508 0.7 0.857169
Target:  5'- aGGCCCagcgucguGGuGC-UGAGGAUCGGCAg- -3'
miRNA:   3'- -CCGGGc-------UCuCGuACUCCUAGUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.