miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 5' -54.9 NC_003521.1 + 113363 0.68 0.932951
Target:  5'- cGGgCCGGGGGCGaggagGAGGGUuaCGGCGg- -3'
miRNA:   3'- -CCgGGCUCUCGUa----CUCCUA--GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 113590 0.69 0.892617
Target:  5'- gGGCCuCGGGGGCAacGGGggCGGCGc- -3'
miRNA:   3'- -CCGG-GCUCUCGUacUCCuaGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 115896 0.69 0.905282
Target:  5'- aGGCCCGGGAagGCcu--GGGUCAGCu-- -3'
miRNA:   3'- -CCGGGCUCU--CGuacuCCUAGUCGuac -5'
14608 5' -54.9 NC_003521.1 + 123349 0.67 0.942404
Target:  5'- aGGCCCGucgccGGGUGUgGAGGAggCGGCGg- -3'
miRNA:   3'- -CCGGGCu----CUCGUA-CUCCUa-GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 124090 0.72 0.744279
Target:  5'- gGGCCCGAcGGCGUGGGcGGgaagCAGCGc- -3'
miRNA:   3'- -CCGGGCUcUCGUACUC-CUa---GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 124170 0.7 0.849467
Target:  5'- cGGCUgGAGAGCGaGAGGc-CGGCGUa -3'
miRNA:   3'- -CCGGgCUCUCGUaCUCCuaGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 125508 0.7 0.857169
Target:  5'- aGGCCCagcgucguGGuGC-UGAGGAUCGGCAg- -3'
miRNA:   3'- -CCGGGc-------UCuCGuACUCCUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 126255 0.66 0.968468
Target:  5'- cGCCCGAGuacuGCAgcGGGAUCucGCAa- -3'
miRNA:   3'- cCGGGCUCu---CGUacUCCUAGu-CGUac -5'
14608 5' -54.9 NC_003521.1 + 127963 0.69 0.911275
Target:  5'- aGCCgCGGGAGCAgcUGGGGcagcUCGGcCAUGa -3'
miRNA:   3'- cCGG-GCUCUCGU--ACUCCu---AGUC-GUAC- -5'
14608 5' -54.9 NC_003521.1 + 128158 0.72 0.763157
Target:  5'- aGGCCUGcaggcAGGGCGUGGGGucgugCAGCAc- -3'
miRNA:   3'- -CCGGGC-----UCUCGUACUCCua---GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 128679 0.77 0.488073
Target:  5'- aGGCCCGAGAGCAgcgacaUGAuGAUCuGCAUc -3'
miRNA:   3'- -CCGGGCUCUCGU------ACUcCUAGuCGUAc -5'
14608 5' -54.9 NC_003521.1 + 135957 0.67 0.942404
Target:  5'- --aCCGAGGGCGUGgacAGGGUCgugaucucgcccAGCGUGu -3'
miRNA:   3'- ccgGGCUCUCGUAC---UCCUAG------------UCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 151615 0.69 0.899062
Target:  5'- gGGCCCGGcAGguUGGGGAagUUGGCGUu -3'
miRNA:   3'- -CCGGGCUcUCguACUCCU--AGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 164996 0.66 0.968468
Target:  5'- -cCCCGAGGGCGaGAucggccgcaaGGAcagguuccUCAGCAUGg -3'
miRNA:   3'- ccGGGCUCUCGUaCU----------CCU--------AGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 167751 0.72 0.75377
Target:  5'- uGGCCgGcGGAGC-UGAGGGUCAccgacaugGCGUGg -3'
miRNA:   3'- -CCGGgC-UCUCGuACUCCUAGU--------CGUAC- -5'
14608 5' -54.9 NC_003521.1 + 168196 0.68 0.922575
Target:  5'- uGGCUCGAcAGCuugGGGGAUCAGaCGg- -3'
miRNA:   3'- -CCGGGCUcUCGua-CUCCUAGUC-GUac -5'
14608 5' -54.9 NC_003521.1 + 175926 0.72 0.744279
Target:  5'- uGGCCCGAgGAGCcgGAGGAggaCAGa--- -3'
miRNA:   3'- -CCGGGCU-CUCGuaCUCCUa--GUCguac -5'
14608 5' -54.9 NC_003521.1 + 178845 0.68 0.937792
Target:  5'- cGGCgCGGGGGCGacGGGAaagUCAGCGg- -3'
miRNA:   3'- -CCGgGCUCUCGUacUCCU---AGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 184131 0.68 0.927878
Target:  5'- cGG-CCGAGAcgGCGUGuuGAUCGuGCAUGg -3'
miRNA:   3'- -CCgGGCUCU--CGUACucCUAGU-CGUAC- -5'
14608 5' -54.9 NC_003521.1 + 185332 0.66 0.968468
Target:  5'- cGCCUGgcuGGAGCAccagGAGGA-CGGCAa- -3'
miRNA:   3'- cCGGGC---UCUCGUa---CUCCUaGUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.