miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 5' -54.9 NC_003521.1 + 5416 0.71 0.816822
Target:  5'- cGCCCGAGgacgaGGCG-GAGGAaUCGGCGUc -3'
miRNA:   3'- cCGGGCUC-----UCGUaCUCCU-AGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 26028 0.66 0.976539
Target:  5'- cGCCCGAcGGCGgugaaGAGGA-CGGCGg- -3'
miRNA:   3'- cCGGGCUcUCGUa----CUCCUaGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 31514 0.66 0.970221
Target:  5'- aGCCCGuGGGCAaGAGGAaguaaucguccacCAGCGUc -3'
miRNA:   3'- cCGGGCuCUCGUaCUCCUa------------GUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 34294 0.67 0.950946
Target:  5'- cGCCC-AGGGcCGUGAGGGgcUCGcGCGUGu -3'
miRNA:   3'- cCGGGcUCUC-GUACUCCU--AGU-CGUAC- -5'
14608 5' -54.9 NC_003521.1 + 34398 0.69 0.899062
Target:  5'- uGGCgCucGGGCcagGUGAGGAUCAGC-UGg -3'
miRNA:   3'- -CCGgGcuCUCG---UACUCCUAGUCGuAC- -5'
14608 5' -54.9 NC_003521.1 + 36709 0.67 0.954881
Target:  5'- uGGCCCGAGcAGgugGAGGcgCAGUg-- -3'
miRNA:   3'- -CCGGGCUC-UCguaCUCCuaGUCGuac -5'
14608 5' -54.9 NC_003521.1 + 39322 0.7 0.864674
Target:  5'- cGGCgUCGcGGGCGgcuAGGGUCAGCGUGu -3'
miRNA:   3'- -CCG-GGCuCUCGUac-UCCUAGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 39455 0.68 0.914762
Target:  5'- cGGCgCCGAGGGCcgcgucgaaggauUGcGGAUCGGCGc- -3'
miRNA:   3'- -CCG-GGCUCUCGu------------ACuCCUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 43654 0.72 0.75377
Target:  5'- cGCCgGAGAGCAgagagGAGGAgaggaggagCAGCAg- -3'
miRNA:   3'- cCGGgCUCUCGUa----CUCCUa--------GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 44250 0.67 0.958596
Target:  5'- uGCgCGGGAguccggcgucacGCcgGAGGAgaUCAGCGUGc -3'
miRNA:   3'- cCGgGCUCU------------CGuaCUCCU--AGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 53394 0.68 0.937318
Target:  5'- aGGCCgCGGcGAGCA-GGGGAuggcgcgUCGGCAg- -3'
miRNA:   3'- -CCGG-GCU-CUCGUaCUCCU-------AGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 63786 0.66 0.976539
Target:  5'- aGCUgGcGGGCAUGcuGAUCAGCAUc -3'
miRNA:   3'- cCGGgCuCUCGUACucCUAGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 73395 0.66 0.968468
Target:  5'- uGGUCCacGGAGgAUGGGGAggaCAGCAg- -3'
miRNA:   3'- -CCGGGc-UCUCgUACUCCUa--GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 86658 0.73 0.695575
Target:  5'- cGGCCgaCGAcAGguUGAGGAUCAGCGc- -3'
miRNA:   3'- -CCGG--GCUcUCguACUCCUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 87289 0.67 0.958234
Target:  5'- gGGCCCGAGGugcGCGUGuucaagaAGGugcgCAGCGa- -3'
miRNA:   3'- -CCGGGCUCU---CGUAC-------UCCua--GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 87348 0.69 0.885953
Target:  5'- cGGCCCGAgccgGAGCccGAGGAggaGGCcgagGUGg -3'
miRNA:   3'- -CCGGGCU----CUCGuaCUCCUag-UCG----UAC- -5'
14608 5' -54.9 NC_003521.1 + 87753 0.67 0.942404
Target:  5'- cGGCCCGGGccccGGCGgcgGAGGA--GGCcUGg -3'
miRNA:   3'- -CCGGGCUC----UCGUa--CUCCUagUCGuAC- -5'
14608 5' -54.9 NC_003521.1 + 92147 0.68 0.932951
Target:  5'- uGGcCCCGAcGAGCGUGuAGuGGUUGGCGg- -3'
miRNA:   3'- -CC-GGGCU-CUCGUAC-UC-CUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 99184 0.71 0.791505
Target:  5'- cGGCCUGGGGGCugaagguggcggcgGAGGAUaCGGCGg- -3'
miRNA:   3'- -CCGGGCUCUCGua------------CUCCUA-GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 108118 0.7 0.867619
Target:  5'- gGGCauGGGGGCuacggucacguuguUGAGGAUCAGCGg- -3'
miRNA:   3'- -CCGggCUCUCGu-------------ACUCCUAGUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.