Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14608 | 5' | -54.9 | NC_003521.1 | + | 184131 | 0.68 | 0.927878 |
Target: 5'- cGG-CCGAGAcgGCGUGuuGAUCGuGCAUGg -3' miRNA: 3'- -CCgGGCUCU--CGUACucCUAGU-CGUAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 108118 | 0.7 | 0.867619 |
Target: 5'- gGGCauGGGGGCuacggucacguuguUGAGGAUCAGCGg- -3' miRNA: 3'- -CCGggCUCUCGu-------------ACUCCUAGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 87348 | 0.69 | 0.885953 |
Target: 5'- cGGCCCGAgccgGAGCccGAGGAggaGGCcgagGUGg -3' miRNA: 3'- -CCGGGCU----CUCGuaCUCCUag-UCG----UAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 113590 | 0.69 | 0.892617 |
Target: 5'- gGGCCuCGGGGGCAacGGGggCGGCGc- -3' miRNA: 3'- -CCGG-GCUCUCGUacUCCuaGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 34398 | 0.69 | 0.899062 |
Target: 5'- uGGCgCucGGGCcagGUGAGGAUCAGC-UGg -3' miRNA: 3'- -CCGgGcuCUCG---UACUCCUAGUCGuAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 151615 | 0.69 | 0.899062 |
Target: 5'- gGGCCCGGcAGguUGGGGAagUUGGCGUu -3' miRNA: 3'- -CCGGGCUcUCguACUCCU--AGUCGUAc -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 115896 | 0.69 | 0.905282 |
Target: 5'- aGGCCCGGGAagGCcu--GGGUCAGCu-- -3' miRNA: 3'- -CCGGGCUCU--CGuacuCCUAGUCGuac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 214917 | 0.69 | 0.911275 |
Target: 5'- aGGUgCG-GAGCGUGAGGAUUcuuaauaccaugAGCAg- -3' miRNA: 3'- -CCGgGCuCUCGUACUCCUAG------------UCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 39455 | 0.68 | 0.914762 |
Target: 5'- cGGCgCCGAGGGCcgcgucgaaggauUGcGGAUCGGCGc- -3' miRNA: 3'- -CCG-GGCUCUCGu------------ACuCCUAGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 239549 | 0.7 | 0.864674 |
Target: 5'- cGGCgUCGcGGGCGgcuAGGGUCAGCGUGu -3' miRNA: 3'- -CCG-GGCuCUCGUac-UCCUAGUCGUAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 125508 | 0.7 | 0.857169 |
Target: 5'- aGGCCCagcgucguGGuGC-UGAGGAUCGGCAg- -3' miRNA: 3'- -CCGGGc-------UCuCGuACUCCUAGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 99184 | 0.71 | 0.791505 |
Target: 5'- cGGCCUGGGGGCugaagguggcggcgGAGGAUaCGGCGg- -3' miRNA: 3'- -CCGGGCUCUCGua------------CUCCUA-GUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 128679 | 0.77 | 0.488073 |
Target: 5'- aGGCCCGAGAGCAgcgacaUGAuGAUCuGCAUc -3' miRNA: 3'- -CCGGGCUCUCGU------ACUcCUAGuCGUAc -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 228599 | 0.77 | 0.488073 |
Target: 5'- uGCCCGcAGAGCAUGAGGggCcGCGUc -3' miRNA: 3'- cCGGGC-UCUCGUACUCCuaGuCGUAc -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 223487 | 0.76 | 0.526216 |
Target: 5'- cGGCCCGGGAG-GUGGggcGGAUCGGCGa- -3' miRNA: 3'- -CCGGGCUCUCgUACU---CCUAGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 175926 | 0.72 | 0.744279 |
Target: 5'- uGGCCCGAgGAGCcgGAGGAggaCAGa--- -3' miRNA: 3'- -CCGGGCU-CUCGuaCUCCUa--GUCguac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 124090 | 0.72 | 0.744279 |
Target: 5'- gGGCCCGAcGGCGUGGGcGGgaagCAGCGc- -3' miRNA: 3'- -CCGGGCUcUCGUACUC-CUa---GUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 43654 | 0.72 | 0.75377 |
Target: 5'- cGCCgGAGAGCAgagagGAGGAgaggaggagCAGCAg- -3' miRNA: 3'- cCGGgCUCUCGUa----CUCCUa--------GUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 128158 | 0.72 | 0.763157 |
Target: 5'- aGGCCUGcaggcAGGGCGUGGGGucgugCAGCAc- -3' miRNA: 3'- -CCGGGC-----UCUCGUACUCCua---GUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 212640 | 0.72 | 0.780676 |
Target: 5'- uGUCCGuacuggcGGAGCAUGcAGGGuaUCAGCAUGc -3' miRNA: 3'- cCGGGC-------UCUCGUAC-UCCU--AGUCGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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