miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 5' -54.9 NC_003521.1 + 86658 0.73 0.695575
Target:  5'- cGGCCgaCGAcAGguUGAGGAUCAGCGc- -3'
miRNA:   3'- -CCGG--GCUcUCguACUCCUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 135957 0.67 0.942404
Target:  5'- --aCCGAGGGCGUGgacAGGGUCgugaucucgcccAGCGUGu -3'
miRNA:   3'- ccgGGCUCUCGUAC---UCCUAG------------UCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 87289 0.67 0.958234
Target:  5'- gGGCCCGAGGugcGCGUGuucaagaAGGugcgCAGCGa- -3'
miRNA:   3'- -CCGGGCUCU---CGUAC-------UCCua--GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 212083 0.66 0.976539
Target:  5'- cGGCCCGcGcGCGUcuGGuuGUCGGCGUGc -3'
miRNA:   3'- -CCGGGCuCuCGUAcuCC--UAGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 124170 0.7 0.849467
Target:  5'- cGGCUgGAGAGCGaGAGGc-CGGCGUa -3'
miRNA:   3'- -CCGGgCUCUCGUaCUCCuaGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 236239 0.7 0.857169
Target:  5'- cGGCCCGuuAGCAaaccgGAGGc-CGGCGUGu -3'
miRNA:   3'- -CCGGGCucUCGUa----CUCCuaGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 198969 0.7 0.864674
Target:  5'- aGGCgCGAGAGCGUGcuGAccgucagccUCAGCGUc -3'
miRNA:   3'- -CCGgGCUCUCGUACucCU---------AGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 199624 0.69 0.885953
Target:  5'- gGGCaggauCGAGAGCGUGAGGA--AGUugGUGg -3'
miRNA:   3'- -CCGg----GCUCUCGUACUCCUagUCG--UAC- -5'
14608 5' -54.9 NC_003521.1 + 168196 0.68 0.922575
Target:  5'- uGGCUCGAcAGCuugGGGGAUCAGaCGg- -3'
miRNA:   3'- -CCGGGCUcUCGua-CUCCUAGUC-GUac -5'
14608 5' -54.9 NC_003521.1 + 87753 0.67 0.942404
Target:  5'- cGGCCCGGGccccGGCGgcgGAGGA--GGCcUGg -3'
miRNA:   3'- -CCGGGCUC----UCGUa--CUCCUagUCGuAC- -5'
14608 5' -54.9 NC_003521.1 + 53394 0.68 0.937318
Target:  5'- aGGCCgCGGcGAGCA-GGGGAuggcgcgUCGGCAg- -3'
miRNA:   3'- -CCGG-GCU-CUCGUaCUCCU-------AGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 127963 0.69 0.911275
Target:  5'- aGCCgCGGGAGCAgcUGGGGcagcUCGGcCAUGa -3'
miRNA:   3'- cCGG-GCUCUCGU--ACUCCu---AGUC-GUAC- -5'
14608 5' -54.9 NC_003521.1 + 167751 0.72 0.75377
Target:  5'- uGGCCgGcGGAGC-UGAGGGUCAccgacaugGCGUGg -3'
miRNA:   3'- -CCGGgC-UCUCGuACUCCUAGU--------CGUAC- -5'
14608 5' -54.9 NC_003521.1 + 198916 0.68 0.937792
Target:  5'- uGCCCaGcAGGGCGUaGAGGAUgGGguUGa -3'
miRNA:   3'- cCGGG-C-UCUCGUA-CUCCUAgUCguAC- -5'
14608 5' -54.9 NC_003521.1 + 196083 0.72 0.763157
Target:  5'- uGGCgCGAGAGCugcaGAccccGGAUCAGCGUc -3'
miRNA:   3'- -CCGgGCUCUCGua--CU----CCUAGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 196963 0.69 0.897152
Target:  5'- cGGCCCGGGAGCcggccggggcgccuGUGAcGGGcccgCGGCcgGc -3'
miRNA:   3'- -CCGGGCUCUCG--------------UACU-CCUa---GUCGuaC- -5'
14608 5' -54.9 NC_003521.1 + 123349 0.67 0.942404
Target:  5'- aGGCCCGucgccGGGUGUgGAGGAggCGGCGg- -3'
miRNA:   3'- -CCGGGCu----CUCGUA-CUCCUa-GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 36709 0.67 0.954881
Target:  5'- uGGCCCGAGcAGgugGAGGcgCAGUg-- -3'
miRNA:   3'- -CCGGGCUC-UCguaCUCCuaGUCGuac -5'
14608 5' -54.9 NC_003521.1 + 5416 0.71 0.816822
Target:  5'- cGCCCGAGgacgaGGCG-GAGGAaUCGGCGUc -3'
miRNA:   3'- cCGGGCUC-----UCGUaCUCCU-AGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 39322 0.7 0.864674
Target:  5'- cGGCgUCGcGGGCGgcuAGGGUCAGCGUGu -3'
miRNA:   3'- -CCG-GGCuCUCGUac-UCCUAGUCGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.