miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 5' -54.9 NC_003521.1 + 239549 0.7 0.864674
Target:  5'- cGGCgUCGcGGGCGgcuAGGGUCAGCGUGu -3'
miRNA:   3'- -CCG-GGCuCUCGUac-UCCUAGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 236239 0.7 0.857169
Target:  5'- cGGCCCGuuAGCAaaccgGAGGc-CGGCGUGu -3'
miRNA:   3'- -CCGGGCucUCGUa----CUCCuaGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 228599 0.77 0.488073
Target:  5'- uGCCCGcAGAGCAUGAGGggCcGCGUc -3'
miRNA:   3'- cCGGGC-UCUCGUACUCCuaGuCGUAc -5'
14608 5' -54.9 NC_003521.1 + 223487 0.76 0.526216
Target:  5'- cGGCCCGGGAG-GUGGggcGGAUCGGCGa- -3'
miRNA:   3'- -CCGGGCUCUCgUACU---CCUAGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 219853 1.11 0.004235
Target:  5'- gGGCCCGAGAGCAUGAGGAUCAGCAUGa -3'
miRNA:   3'- -CCGGGCUCUCGUACUCCUAGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 214917 0.69 0.911275
Target:  5'- aGGUgCG-GAGCGUGAGGAUUcuuaauaccaugAGCAg- -3'
miRNA:   3'- -CCGgGCuCUCGUACUCCUAG------------UCGUac -5'
14608 5' -54.9 NC_003521.1 + 212640 0.72 0.780676
Target:  5'- uGUCCGuacuggcGGAGCAUGcAGGGuaUCAGCAUGc -3'
miRNA:   3'- cCGGGC-------UCUCGUAC-UCCU--AGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 212083 0.66 0.976539
Target:  5'- cGGCCCGcGcGCGUcuGGuuGUCGGCGUGc -3'
miRNA:   3'- -CCGGGCuCuCGUAcuCC--UAGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 211343 0.66 0.974039
Target:  5'- gGGCgCGAGuGguUGGGGucccgCAGCAg- -3'
miRNA:   3'- -CCGgGCUCuCguACUCCua---GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 199624 0.69 0.885953
Target:  5'- gGGCaggauCGAGAGCGUGAGGA--AGUugGUGg -3'
miRNA:   3'- -CCGg----GCUCUCGUACUCCUagUCG--UAC- -5'
14608 5' -54.9 NC_003521.1 + 198969 0.7 0.864674
Target:  5'- aGGCgCGAGAGCGUGcuGAccgucagccUCAGCGUc -3'
miRNA:   3'- -CCGgGCUCUCGUACucCU---------AGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 198916 0.68 0.937792
Target:  5'- uGCCCaGcAGGGCGUaGAGGAUgGGguUGa -3'
miRNA:   3'- cCGGG-C-UCUCGUA-CUCCUAgUCguAC- -5'
14608 5' -54.9 NC_003521.1 + 196963 0.69 0.897152
Target:  5'- cGGCCCGGGAGCcggccggggcgccuGUGAcGGGcccgCGGCcgGc -3'
miRNA:   3'- -CCGGGCUCUCG--------------UACU-CCUa---GUCGuaC- -5'
14608 5' -54.9 NC_003521.1 + 196083 0.72 0.763157
Target:  5'- uGGCgCGAGAGCugcaGAccccGGAUCAGCGUc -3'
miRNA:   3'- -CCGgGCUCUCGua--CU----CCUAGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 187192 0.66 0.976539
Target:  5'- cGGCCCGccuGCAUcGGGGAcauucgUCGGCGg- -3'
miRNA:   3'- -CCGGGCucuCGUA-CUCCU------AGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 185332 0.66 0.968468
Target:  5'- cGCCUGgcuGGAGCAccagGAGGA-CGGCAa- -3'
miRNA:   3'- cCGGGC---UCUCGUa---CUCCUaGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 184131 0.68 0.927878
Target:  5'- cGG-CCGAGAcgGCGUGuuGAUCGuGCAUGg -3'
miRNA:   3'- -CCgGGCUCU--CGUACucCUAGU-CGUAC- -5'
14608 5' -54.9 NC_003521.1 + 178845 0.68 0.937792
Target:  5'- cGGCgCGGGGGCGacGGGAaagUCAGCGg- -3'
miRNA:   3'- -CCGgGCUCUCGUacUCCU---AGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 175926 0.72 0.744279
Target:  5'- uGGCCCGAgGAGCcgGAGGAggaCAGa--- -3'
miRNA:   3'- -CCGGGCU-CUCGuaCUCCUa--GUCguac -5'
14608 5' -54.9 NC_003521.1 + 168196 0.68 0.922575
Target:  5'- uGGCUCGAcAGCuugGGGGAUCAGaCGg- -3'
miRNA:   3'- -CCGGGCUcUCGua-CUCCUAGUC-GUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.