miRNA display CGI


Results 61 - 80 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 202779 0.67 0.855337
Target:  5'- -aGGCGCGuaaagcuaccguuACCGUCGaacCGCCGUCGa -3'
miRNA:   3'- cgCUGCGCc------------UGGCAGCa--GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 146168 0.67 0.850983
Target:  5'- aGCGAgGUGGGCCGcgaGUUGCUGgccggCGg -3'
miRNA:   3'- -CGCUgCGCCUGGCag-CAGCGGCa----GCa -5'
14609 3' -59.6 NC_003521.1 + 234414 0.67 0.850983
Target:  5'- cCGAgGCGGcaagacCCGUCGcCGCCG-CGg -3'
miRNA:   3'- cGCUgCGCCu-----GGCAGCaGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 124539 0.67 0.850983
Target:  5'- gGgGACGaaaGGucccccccaGCCaUCGUUGCCGUCGUu -3'
miRNA:   3'- -CgCUGCg--CC---------UGGcAGCAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 223006 0.67 0.850983
Target:  5'- gGCGGUGgGGGUCGUCGUCcGCCGgUCGc -3'
miRNA:   3'- -CGCUGCgCCUGGCAGCAG-CGGC-AGCa -5'
14609 3' -59.6 NC_003521.1 + 28328 0.67 0.84359
Target:  5'- cGCGGCcuGCGGACCGcCGgUgGCCGauagCGa -3'
miRNA:   3'- -CGCUG--CGCCUGGCaGC-AgCGGCa---GCa -5'
14609 3' -59.6 NC_003521.1 + 239690 0.67 0.84359
Target:  5'- aCGGCaGCGGuuCGUguccCGUCGCCGccUCGUg -3'
miRNA:   3'- cGCUG-CGCCugGCA----GCAGCGGC--AGCA- -5'
14609 3' -59.6 NC_003521.1 + 39463 0.67 0.843589
Target:  5'- aCGGCaGCGGuuCGUguccCGUCGCCGccUCGUg -3'
miRNA:   3'- cGCUG-CGCCugGCA----GCAGCGGC--AGCA- -5'
14609 3' -59.6 NC_003521.1 + 198210 0.67 0.843589
Target:  5'- gGCGGCGaCGGcGCCGcCGgcgGCCGUgGUa -3'
miRNA:   3'- -CGCUGC-GCC-UGGCaGCag-CGGCAgCA- -5'
14609 3' -59.6 NC_003521.1 + 97652 0.67 0.842091
Target:  5'- gGCGGCGCcgGGuccgacccccacgggAUCGUCGaggacgcccacucccUCGCCGUCGg -3'
miRNA:   3'- -CGCUGCG--CC---------------UGGCAGC---------------AGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 169460 0.67 0.836031
Target:  5'- gGCGGCG-GGuuCGUCGccaggcgCGUCGUCGUu -3'
miRNA:   3'- -CGCUGCgCCugGCAGCa------GCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 53171 0.67 0.836031
Target:  5'- gGCGGCGaGGAggUCGgCGaCGCCGUCGg -3'
miRNA:   3'- -CGCUGCgCCU--GGCaGCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 71371 0.67 0.836031
Target:  5'- gGCGACGaacccgccGCCGcCGaCGCCGUCGUc -3'
miRNA:   3'- -CGCUGCgcc-----UGGCaGCaGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 165807 0.68 0.828314
Target:  5'- gGCGAUGCGcgaGACCugcUCGUUGCCGUa-- -3'
miRNA:   3'- -CGCUGCGC---CUGGc--AGCAGCGGCAgca -5'
14609 3' -59.6 NC_003521.1 + 7618 0.68 0.828314
Target:  5'- gGUGGCgGCGGACUGUCGggaaCGaCCGaCGg -3'
miRNA:   3'- -CGCUG-CGCCUGGCAGCa---GC-GGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 236460 0.68 0.828314
Target:  5'- cGgGACGCGGGCCGcgaugagCGaacCGCCGgCGg -3'
miRNA:   3'- -CgCUGCGCCUGGCa------GCa--GCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 128484 0.68 0.828314
Target:  5'- aGCGGCGUGaGGCUGUgCG-CGCCGgccugCGa -3'
miRNA:   3'- -CGCUGCGC-CUGGCA-GCaGCGGCa----GCa -5'
14609 3' -59.6 NC_003521.1 + 17020 0.68 0.828314
Target:  5'- gGCGGCGCaGGcCCGUCGUCuggcgGCCcaCGg -3'
miRNA:   3'- -CGCUGCG-CCuGGCAGCAG-----CGGcaGCa -5'
14609 3' -59.6 NC_003521.1 + 28861 0.68 0.828314
Target:  5'- gGCGGCGCGGcACgGUCGagUCGCCc---- -3'
miRNA:   3'- -CGCUGCGCC-UGgCAGC--AGCGGcagca -5'
14609 3' -59.6 NC_003521.1 + 46449 0.68 0.828314
Target:  5'- gGCuGCGgGGGCUgGUCGgccUCGUCGUCGUc -3'
miRNA:   3'- -CGcUGCgCCUGG-CAGC---AGCGGCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.