miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 119476 0.67 0.874147
Target:  5'- aGCcGCGCGGggcgugcagggugaaGCCGUUGUCGCCaugccggGUCa- -3'
miRNA:   3'- -CGcUGCGCC---------------UGGCAGCAGCGG-------CAGca -5'
14609 3' -59.6 NC_003521.1 + 131392 0.67 0.872122
Target:  5'- gGUGACGggcgucagccUGGACCG-CaUCGCCGUCa- -3'
miRNA:   3'- -CGCUGC----------GCCUGGCaGcAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 212859 0.67 0.872122
Target:  5'- gGgGGCaGCGGuAUgGUCGUCGUCGUgGa -3'
miRNA:   3'- -CgCUG-CGCC-UGgCAGCAGCGGCAgCa -5'
14609 3' -59.6 NC_003521.1 + 198015 0.67 0.872122
Target:  5'- uGCGuuCGgGGACCGUgGcCGCUGcCGa -3'
miRNA:   3'- -CGCu-GCgCCUGGCAgCaGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 151223 0.67 0.872122
Target:  5'- aCGACGuCGGACCGUU-UCGCgGUUu- -3'
miRNA:   3'- cGCUGC-GCCUGGCAGcAGCGgCAGca -5'
14609 3' -59.6 NC_003521.1 + 94149 0.67 0.872122
Target:  5'- aGgGAgcUGCGGucggcuucguuGCCGUCcuccUCGCCGUCGUc -3'
miRNA:   3'- -CgCU--GCGCC-----------UGGCAGc---AGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 218788 0.67 0.871444
Target:  5'- -gGGCGCGGAaaacaguCCGUCuuaUCGgCGUCGg -3'
miRNA:   3'- cgCUGCGCCU-------GGCAGc--AGCgGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 171029 0.67 0.865254
Target:  5'- uGCGA-GCGucaucucgacGGCCGcucccUCGUCGCCGUgGUa -3'
miRNA:   3'- -CGCUgCGC----------CUGGC-----AGCAGCGGCAgCA- -5'
14609 3' -59.6 NC_003521.1 + 201373 0.67 0.865254
Target:  5'- uCGACGCGG-CCcUCGgCGCCGggcUCGg -3'
miRNA:   3'- cGCUGCGCCuGGcAGCaGCGGC---AGCa -5'
14609 3' -59.6 NC_003521.1 + 178508 0.67 0.865254
Target:  5'- uGCGuCGCGGuACC-UCGUCGCCcaucCGg -3'
miRNA:   3'- -CGCuGCGCC-UGGcAGCAGCGGca--GCa -5'
14609 3' -59.6 NC_003521.1 + 72295 0.67 0.863859
Target:  5'- cGCcGCGCuGGCCGccagccugcuggCGUCGCCGUCc- -3'
miRNA:   3'- -CGcUGCGcCUGGCa-----------GCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 234299 0.67 0.863159
Target:  5'- cGgGACGCaGACCGcccUCGUCaccggugagccucuGCCGUCa- -3'
miRNA:   3'- -CgCUGCGcCUGGC---AGCAG--------------CGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 129720 0.67 0.858919
Target:  5'- cCGGcCGCGGcCCGUCGacgcgagcgcguccgCGCCGUCu- -3'
miRNA:   3'- cGCU-GCGCCuGGCAGCa--------------GCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 209815 0.67 0.858206
Target:  5'- cGCGuccuCGcCGGcGCCGUCGUCGCCc---- -3'
miRNA:   3'- -CGCu---GC-GCC-UGGCAGCAGCGGcagca -5'
14609 3' -59.6 NC_003521.1 + 100729 0.67 0.858206
Target:  5'- -gGAgGCGGGggguucaugUCGUCGuccggggcuUCGCCGUCGUc -3'
miRNA:   3'- cgCUgCGCCU---------GGCAGC---------AGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 116723 0.67 0.858206
Target:  5'- aGCGACGCGcugcuucCCGcCcaCGCCGUCGg -3'
miRNA:   3'- -CGCUGCGCcu-----GGCaGcaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 165185 0.67 0.858206
Target:  5'- uGCGcCGCuGuuGCCGUCGUCaUCGUCGg -3'
miRNA:   3'- -CGCuGCGcC--UGGCAGCAGcGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 36404 0.67 0.858206
Target:  5'- gGCGgcaGCGCGGGgCGUgGauuUCGCgGUCGg -3'
miRNA:   3'- -CGC---UGCGCCUgGCAgC---AGCGgCAGCa -5'
14609 3' -59.6 NC_003521.1 + 135434 0.67 0.858206
Target:  5'- cGCGAuuuggcgccCGCGGgaACCGUCGgucCGCCccccGUCGa -3'
miRNA:   3'- -CGCU---------GCGCC--UGGCAGCa--GCGG----CAGCa -5'
14609 3' -59.6 NC_003521.1 + 5546 0.67 0.856057
Target:  5'- cCGGCGCGGccGCCGccaucguuguuccgUcCGUCGCUGUCa- -3'
miRNA:   3'- cGCUGCGCC--UGGC--------------A-GCAGCGGCAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.