Results 21 - 40 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14609 | 3' | -59.6 | NC_003521.1 | + | 125472 | 0.66 | 0.897711 |
Target: 5'- aGCGACGCGuGACC-UCcugUGCUGUCuGUg -3' miRNA: 3'- -CGCUGCGC-CUGGcAGca-GCGGCAG-CA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 74739 | 0.66 | 0.897711 |
Target: 5'- uCGuCGuCGGucucCCGacuggCGUCGCCGUCGa -3' miRNA: 3'- cGCuGC-GCCu---GGCa----GCAGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 101377 | 0.66 | 0.897711 |
Target: 5'- gGUG-CGCGaGCCGUCG-CGCCGcUUGa -3' miRNA: 3'- -CGCuGCGCcUGGCAGCaGCGGC-AGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 100256 | 0.66 | 0.897711 |
Target: 5'- cCGACGaCGaGCUGUCGcCGCCGcCGc -3' miRNA: 3'- cGCUGC-GCcUGGCAGCaGCGGCaGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 98738 | 0.66 | 0.897711 |
Target: 5'- uGCcGCGgGGGUgGUCGUCGuaGUCGUa -3' miRNA: 3'- -CGcUGCgCCUGgCAGCAGCggCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 185619 | 0.66 | 0.897109 |
Target: 5'- cCGACggagccgGCGGACUGcCaUCGCCgGUCGUg -3' miRNA: 3'- cGCUG-------CGCCUGGCaGcAGCGG-CAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 150364 | 0.66 | 0.891604 |
Target: 5'- uGCG-UGCGGACCGUgGUCGaCUG-Cu- -3' miRNA: 3'- -CGCuGCGCCUGGCAgCAGC-GGCaGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 104170 | 0.66 | 0.891603 |
Target: 5'- gGCGGCGCGGGUCGcacggCGUUGCgGUaGUa -3' miRNA: 3'- -CGCUGCGCCUGGCa----GCAGCGgCAgCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 93921 | 0.66 | 0.891603 |
Target: 5'- cGCGGCaaGCGGcgacuACCGcUGccCGCCGUCGUc -3' miRNA: 3'- -CGCUG--CGCC-----UGGCaGCa-GCGGCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 117489 | 0.66 | 0.891603 |
Target: 5'- cGCGGCGCugGGGCCGUCGgUGU--UCGg -3' miRNA: 3'- -CGCUGCG--CCUGGCAGCaGCGgcAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 97378 | 0.66 | 0.889733 |
Target: 5'- aGCGaACGCaGAaaacacaacaacggUCGgaggaUCGUCGCCGUCGg -3' miRNA: 3'- -CGC-UGCGcCU--------------GGC-----AGCAGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 167606 | 0.66 | 0.885301 |
Target: 5'- uCGugGUGGcguUgGUCGUCGUCGUCc- -3' miRNA: 3'- cGCugCGCCu--GgCAGCAGCGGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 126562 | 0.66 | 0.885301 |
Target: 5'- cGCGAaggcCGUGGGCag-CGggaagcCGCCGUCGUg -3' miRNA: 3'- -CGCU----GCGCCUGgcaGCa-----GCGGCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 19063 | 0.66 | 0.885301 |
Target: 5'- gGCGGCGCGGcgcagaCGcUGaCGCUGUCGUu -3' miRNA: 3'- -CGCUGCGCCug----GCaGCaGCGGCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 210917 | 0.66 | 0.885301 |
Target: 5'- uUGACGgccaCGGGUCGUCgGUCGUCGUCGc -3' miRNA: 3'- cGCUGC----GCCUGGCAG-CAGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 74812 | 0.66 | 0.885301 |
Target: 5'- -aGACGCGGACgGaCGgCGCCGagcgCGa -3' miRNA: 3'- cgCUGCGCCUGgCaGCaGCGGCa---GCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 168372 | 0.66 | 0.88466 |
Target: 5'- aGCGGCagucgGCGGGCaggauguagguggCGUUGcCGCCGUUGg -3' miRNA: 3'- -CGCUG-----CGCCUG-------------GCAGCaGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 204899 | 0.66 | 0.878805 |
Target: 5'- cGCGGCG-GGACgGUgGcCGCCGaUGUa -3' miRNA: 3'- -CGCUGCgCCUGgCAgCaGCGGCaGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 129672 | 0.66 | 0.878805 |
Target: 5'- cGCGcuAUGCGGACCGUccCGUgGCCccagCGg -3' miRNA: 3'- -CGC--UGCGCCUGGCA--GCAgCGGca--GCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 76421 | 0.66 | 0.878805 |
Target: 5'- gGUGugGUGGugcuggcgACCGUUGUCGuugggguuaCCGUCGc -3' miRNA: 3'- -CGCugCGCC--------UGGCAGCAGC---------GGCAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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