miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 62458 0.68 0.820444
Target:  5'- cGCGcACGgGGAuuuuuggaaaCCGcCGUCGUCGUCa- -3'
miRNA:   3'- -CGC-UGCgCCU----------GGCaGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 68700 0.73 0.547408
Target:  5'- cGCGACGaacucauGACCGUgG-CGCCGUCGg -3'
miRNA:   3'- -CGCUGCgc-----CUGGCAgCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 71062 0.76 0.38485
Target:  5'- cGCGGCGCcauGGGCCGaCGUUGCUGaUCGUa -3'
miRNA:   3'- -CGCUGCG---CCUGGCaGCAGCGGC-AGCA- -5'
14609 3' -59.6 NC_003521.1 + 71371 0.67 0.836031
Target:  5'- gGCGACGaacccgccGCCGcCGaCGCCGUCGUc -3'
miRNA:   3'- -CGCUGCgcc-----UGGCaGCaGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 72295 0.67 0.863859
Target:  5'- cGCcGCGCuGGCCGccagccugcuggCGUCGCCGUCc- -3'
miRNA:   3'- -CGcUGCGcCUGGCa-----------GCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 74541 0.68 0.820444
Target:  5'- gGCcACGCGGACCaGcCG-CGCCGUgcgCGUg -3'
miRNA:   3'- -CGcUGCGCCUGG-CaGCaGCGGCA---GCA- -5'
14609 3' -59.6 NC_003521.1 + 74588 0.7 0.725678
Target:  5'- gGCGGCGCGGcgucccgcgGCCGgcgCGccUCGCCGcCGc -3'
miRNA:   3'- -CGCUGCGCC---------UGGCa--GC--AGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 74739 0.66 0.897711
Target:  5'- uCGuCGuCGGucucCCGacuggCGUCGCCGUCGa -3'
miRNA:   3'- cGCuGC-GCCu---GGCa----GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 74812 0.66 0.885301
Target:  5'- -aGACGCGGACgGaCGgCGCCGagcgCGa -3'
miRNA:   3'- cgCUGCGCCUGgCaGCaGCGGCa---GCa -5'
14609 3' -59.6 NC_003521.1 + 75883 0.66 0.898311
Target:  5'- gGCGACGCgagccgccggaggagGGGcCCGguuggucauccucaUCGUCGUCGUCa- -3'
miRNA:   3'- -CGCUGCG---------------CCU-GGC--------------AGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 76421 0.66 0.878805
Target:  5'- gGUGugGUGGugcuggcgACCGUUGUCGuugggguuaCCGUCGc -3'
miRNA:   3'- -CGCugCGCC--------UGGCAGCAGC---------GGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 76944 0.66 0.908768
Target:  5'- aGCG-CGCGGugCGUuccagcaUGUCGCgGcCGa -3'
miRNA:   3'- -CGCuGCGCCugGCA-------GCAGCGgCaGCa -5'
14609 3' -59.6 NC_003521.1 + 77047 0.68 0.804269
Target:  5'- gGUGGCGCcgcuACCGUUGUUGCCGcCGc -3'
miRNA:   3'- -CGCUGCGcc--UGGCAGCAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 77515 0.71 0.660403
Target:  5'- cGCGcCGCuGACCGUgGacaCGCCGUCGc -3'
miRNA:   3'- -CGCuGCGcCUGGCAgCa--GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 78206 0.69 0.770371
Target:  5'- aGCgGGCGCGGcGCuCGUCGgagGCUGUCGa -3'
miRNA:   3'- -CG-CUGCGCC-UG-GCAGCag-CGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 82843 0.69 0.743814
Target:  5'- uCGcCGCGGGCggcggCGUCGcuaccagCGCCGUCGUc -3'
miRNA:   3'- cGCuGCGCCUG-----GCAGCa------GCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 84728 0.72 0.575342
Target:  5'- -aGACGCGGgcacuGCCGUCGUCGUCuugcUCGg -3'
miRNA:   3'- cgCUGCGCC-----UGGCAGCAGCGGc---AGCa -5'
14609 3' -59.6 NC_003521.1 + 85286 0.71 0.631048
Target:  5'- gGCuGACGUGGA-CGUuaauauagaaccaCGUCGCCGUCGc -3'
miRNA:   3'- -CG-CUGCGCCUgGCA-------------GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 89563 0.68 0.812427
Target:  5'- uCGuCGCGcuccUCGUCGUCGCCGUCc- -3'
miRNA:   3'- cGCuGCGCcu--GGCAGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 89614 0.66 0.897711
Target:  5'- gGCGcCGCGGucACCGUgGUggUGaCCGUCGc -3'
miRNA:   3'- -CGCuGCGCC--UGGCAgCA--GC-GGCAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.