miRNA display CGI


Results 1 - 20 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 5509 0.66 0.911556
Target:  5'- -aGAgGCGGuguagccgucgcauCUGUCGUCGCCaGUUGg -3'
miRNA:   3'- cgCUgCGCCu-------------GGCAGCAGCGG-CAGCa -5'
14609 3' -59.6 NC_003521.1 + 5546 0.67 0.856057
Target:  5'- cCGGCGCGGccGCCGccaucguuguuccgUcCGUCGCUGUCa- -3'
miRNA:   3'- cGCUGCGCC--UGGC--------------A-GCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 6864 0.76 0.38485
Target:  5'- gGCGuggguaGCGGAuCCGUCGUCGUCGUgGUu -3'
miRNA:   3'- -CGCug----CGCCU-GGCAGCAGCGGCAgCA- -5'
14609 3' -59.6 NC_003521.1 + 7618 0.68 0.828314
Target:  5'- gGUGGCgGCGGACUGUCGggaaCGaCCGaCGg -3'
miRNA:   3'- -CGCUG-CGCCUGGCAGCa---GC-GGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 17020 0.68 0.828314
Target:  5'- gGCGGCGCaGGcCCGUCGUCuggcgGCCcaCGg -3'
miRNA:   3'- -CGCUGCG-CCuGGCAGCAG-----CGGcaGCa -5'
14609 3' -59.6 NC_003521.1 + 18858 0.66 0.909329
Target:  5'- uGCGGCGUGGAgCUGUCGUgucaGCUGagcagCGa -3'
miRNA:   3'- -CGCUGCGCCU-GGCAGCAg---CGGCa----GCa -5'
14609 3' -59.6 NC_003521.1 + 19063 0.66 0.885301
Target:  5'- gGCGGCGCGGcgcagaCGcUGaCGCUGUCGUu -3'
miRNA:   3'- -CGCUGCGCCug----GCaGCaGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 20174 0.72 0.613046
Target:  5'- gGCGACGaCGGuCCG-CGUCGCgacgucauCGUCGg -3'
miRNA:   3'- -CGCUGC-GCCuGGCaGCAGCG--------GCAGCa -5'
14609 3' -59.6 NC_003521.1 + 23645 0.75 0.416457
Target:  5'- gGCGGCaUGGACCGUCGUCGuuGgcaggucaUCGUa -3'
miRNA:   3'- -CGCUGcGCCUGGCAGCAGCggC--------AGCA- -5'
14609 3' -59.6 NC_003521.1 + 28328 0.67 0.84359
Target:  5'- cGCGGCcuGCGGACCGcCGgUgGCCGauagCGa -3'
miRNA:   3'- -CGCUG--CGCCUGGCaGC-AgCGGCa---GCa -5'
14609 3' -59.6 NC_003521.1 + 28861 0.68 0.828314
Target:  5'- gGCGGCGCGGcACgGUCGagUCGCCc---- -3'
miRNA:   3'- -CGCUGCGCC-UGgCAGC--AGCGGcagca -5'
14609 3' -59.6 NC_003521.1 + 29737 0.77 0.346205
Target:  5'- cGCGACGgacaggcaggaaGGAUCGUCGUCGCCG-CGa -3'
miRNA:   3'- -CGCUGCg-----------CCUGGCAGCAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 34451 0.72 0.594147
Target:  5'- gGCGcUGCGGGCCuggggGUCGUCGCCG-Ca- -3'
miRNA:   3'- -CGCuGCGCCUGG-----CAGCAGCGGCaGca -5'
14609 3' -59.6 NC_003521.1 + 36404 0.67 0.858206
Target:  5'- gGCGgcaGCGCGGGgCGUgGauuUCGCgGUCGg -3'
miRNA:   3'- -CGC---UGCGCCUgGCAgC---AGCGgCAGCa -5'
14609 3' -59.6 NC_003521.1 + 39463 0.67 0.843589
Target:  5'- aCGGCaGCGGuuCGUguccCGUCGCCGccUCGUg -3'
miRNA:   3'- cGCUG-CGCCugGCA----GCAGCGGC--AGCA- -5'
14609 3' -59.6 NC_003521.1 + 46449 0.68 0.828314
Target:  5'- gGCuGCGgGGGCUgGUCGgccUCGUCGUCGUc -3'
miRNA:   3'- -CGcUGCgCCUGG-CAGC---AGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 47932 0.66 0.909329
Target:  5'- cGCGcUGCuGAUCGUCaacCGCCGUCGc -3'
miRNA:   3'- -CGCuGCGcCUGGCAGca-GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 49680 0.68 0.820444
Target:  5'- gGCGAgCGCGG--CGcUGUCGCCGUCa- -3'
miRNA:   3'- -CGCU-GCGCCugGCaGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 53171 0.67 0.836031
Target:  5'- gGCGGCGaGGAggUCGgCGaCGCCGUCGg -3'
miRNA:   3'- -CGCUGCgCCU--GGCaGCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 61885 0.68 0.78756
Target:  5'- aGCuGACGCuccaGGaaGCC-UCGUCGCCGUCa- -3'
miRNA:   3'- -CG-CUGCG----CC--UGGcAGCAGCGGCAGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.