miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 239690 0.67 0.84359
Target:  5'- aCGGCaGCGGuuCGUguccCGUCGCCGccUCGUg -3'
miRNA:   3'- cGCUG-CGCCugGCA----GCAGCGGC--AGCA- -5'
14609 3' -59.6 NC_003521.1 + 236460 0.68 0.828314
Target:  5'- cGgGACGCGGGCCGcgaugagCGaacCGCCGgCGg -3'
miRNA:   3'- -CgCUGCGCCUGGCa------GCa--GCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 236142 0.68 0.828314
Target:  5'- aCGGgGgGGACCGcgcgaCGUCGCCGgCGg -3'
miRNA:   3'- cGCUgCgCCUGGCa----GCAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 235289 0.66 0.90362
Target:  5'- gGCGGcCGCGccGGCUGcCGUCaCCGUCGc -3'
miRNA:   3'- -CGCU-GCGC--CUGGCaGCAGcGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 234414 0.67 0.850983
Target:  5'- cCGAgGCGGcaagacCCGUCGcCGCCG-CGg -3'
miRNA:   3'- cGCUgCGCCu-----GGCAGCaGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 234299 0.67 0.863159
Target:  5'- cGgGACGCaGACCGcccUCGUCaccggugagccucuGCCGUCa- -3'
miRNA:   3'- -CgCUGCGcCUGGC---AGCAG--------------CGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 233181 0.7 0.697973
Target:  5'- cCGugGCGG-CCGcCGUUaCCGUCGg -3'
miRNA:   3'- cGCugCGCCuGGCaGCAGcGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 229558 0.69 0.761615
Target:  5'- aGCGugauaugccccaACGCGGGCuCGaCGuUCGCCGUCa- -3'
miRNA:   3'- -CGC------------UGCGCCUG-GCaGC-AGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 226770 0.76 0.3772
Target:  5'- uGCGGa-CGGACCGUaGUCGUCGUCGUc -3'
miRNA:   3'- -CGCUgcGCCUGGCAgCAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 224011 0.72 0.603588
Target:  5'- uGCGGCagcgGCGGGCCcggcgGUCGgggcgggCGCCGUCGc -3'
miRNA:   3'- -CGCUG----CGCCUGG-----CAGCa------GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 223397 0.69 0.734784
Target:  5'- cCGACGCGGGCCGUguggcgcccCGgcgCGgCGUCa- -3'
miRNA:   3'- cGCUGCGCCUGGCA---------GCa--GCgGCAGca -5'
14609 3' -59.6 NC_003521.1 + 223336 0.66 0.909329
Target:  5'- cGUGACcgGCGGcGCCGcuacCGgUGCCGUCGUc -3'
miRNA:   3'- -CGCUG--CGCC-UGGCa---GCaGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 223006 0.67 0.850983
Target:  5'- gGCGGUGgGGGUCGUCGUCcGCCGgUCGc -3'
miRNA:   3'- -CGCUGCgCCUGGCAGCAG-CGGC-AGCa -5'
14609 3' -59.6 NC_003521.1 + 221848 0.66 0.909329
Target:  5'- cGCGGCGCGuccucGACCcccuccucGUUGUCGCUGggGUa -3'
miRNA:   3'- -CGCUGCGC-----CUGG--------CAGCAGCGGCagCA- -5'
14609 3' -59.6 NC_003521.1 + 220652 1.08 0.003359
Target:  5'- cGCGACGCGGACCGUCGUCGCCGUCGUc -3'
miRNA:   3'- -CGCUGCGCCUGGCAGCAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 218788 0.67 0.871444
Target:  5'- -gGGCGCGGAaaacaguCCGUCuuaUCGgCGUCGg -3'
miRNA:   3'- cgCUGCGCCU-------GGCAGc--AGCgGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 217548 0.73 0.529023
Target:  5'- -gGAaGCGGuGCaCGUCGUCGCCGUCa- -3'
miRNA:   3'- cgCUgCGCC-UG-GCAGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 212859 0.67 0.872122
Target:  5'- gGgGGCaGCGGuAUgGUCGUCGUCGUgGa -3'
miRNA:   3'- -CgCUG-CGCC-UGgCAGCAGCGGCAgCa -5'
14609 3' -59.6 NC_003521.1 + 212667 0.79 0.27511
Target:  5'- gGCGuCGCGGGCaugGUCGcCGCCGUCGc -3'
miRNA:   3'- -CGCuGCGCCUGg--CAGCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 212076 0.68 0.795978
Target:  5'- gGUGGCGCGGcCCGcgcgCGUCugGuuGUCGg -3'
miRNA:   3'- -CGCUGCGCCuGGCa---GCAG--CggCAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.