miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 74588 0.7 0.725678
Target:  5'- gGCGGCGCGGcgucccgcgGCCGgcgCGccUCGCCGcCGc -3'
miRNA:   3'- -CGCUGCGCC---------UGGCa--GC--AGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 85286 0.71 0.631048
Target:  5'- gGCuGACGUGGA-CGUuaauauagaaccaCGUCGCCGUCGc -3'
miRNA:   3'- -CG-CUGCGCCUgGCA-------------GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 102596 0.71 0.641473
Target:  5'- gGCuGGCGCuGGCCa-CGUCGUCGUCGUg -3'
miRNA:   3'- -CG-CUGCGcCUGGcaGCAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 168936 0.71 0.660403
Target:  5'- -gGGCGCaggcaGGGCCGccgcUGUCGCCGUCGc -3'
miRNA:   3'- cgCUGCG-----CCUGGCa---GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 77515 0.71 0.660403
Target:  5'- cGCGcCGCuGACCGUgGacaCGCCGUCGc -3'
miRNA:   3'- -CGCuGCGcCUGGCAgCa--GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 124097 0.7 0.679254
Target:  5'- aCGGCGUGGGCgGgaagcagcgCGUCGCUGUgGUg -3'
miRNA:   3'- cGCUGCGCCUGgCa--------GCAGCGGCAgCA- -5'
14609 3' -59.6 NC_003521.1 + 233181 0.7 0.697973
Target:  5'- cCGugGCGG-CCGcCGUUaCCGUCGg -3'
miRNA:   3'- cGCugCGCCuGGCaGCAGcGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 179991 0.7 0.725678
Target:  5'- uGCucuCGCGGGCCGcCGUCGUggcauccuCGUCGa -3'
miRNA:   3'- -CGcu-GCGCCUGGCaGCAGCG--------GCAGCa -5'
14609 3' -59.6 NC_003521.1 + 164451 0.7 0.725678
Target:  5'- cGCGGcCGCGG-CCGUCacgGUCGCCGcUGc -3'
miRNA:   3'- -CGCU-GCGCCuGGCAG---CAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 127884 0.71 0.62157
Target:  5'- cGCGGCgugcacaGCGGcACCGUC-UCGCUGUUGUc -3'
miRNA:   3'- -CGCUG-------CGCC-UGGCAGcAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 118927 0.72 0.613046
Target:  5'- cGCGGCGUGGGCgGcggCGUC-CCGUCa- -3'
miRNA:   3'- -CGCUGCGCCUGgCa--GCAGcGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 224011 0.72 0.603588
Target:  5'- uGCGGCagcgGCGGGCCcggcgGUCGgggcgggCGCCGUCGc -3'
miRNA:   3'- -CGCUG----CGCCUGG-----CAGCa------GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 71062 0.76 0.38485
Target:  5'- cGCGGCGCcauGGGCCGaCGUUGCUGaUCGUa -3'
miRNA:   3'- -CGCUGCG---CCUGGCaGCAGCGGC-AGCA- -5'
14609 3' -59.6 NC_003521.1 + 118212 0.74 0.475389
Target:  5'- aGCG-CGCGGccGCCGcCGUCGCCGggGUg -3'
miRNA:   3'- -CGCuGCGCC--UGGCaGCAGCGGCagCA- -5'
14609 3' -59.6 NC_003521.1 + 121032 0.74 0.492983
Target:  5'- gGCGGCGCcGACC-UCGUCGCCGcugCGc -3'
miRNA:   3'- -CGCUGCGcCUGGcAGCAGCGGCa--GCa -5'
14609 3' -59.6 NC_003521.1 + 127035 0.73 0.510871
Target:  5'- cGCGgugcccgucGCGCuGGCCGUCGcCGUCGUCGa -3'
miRNA:   3'- -CGC---------UGCGcCUGGCAGCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 217548 0.73 0.529023
Target:  5'- -gGAaGCGGuGCaCGUCGUCGCCGUCa- -3'
miRNA:   3'- cgCUgCGCC-UG-GCAGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 68700 0.73 0.547408
Target:  5'- cGCGACGaacucauGACCGUgG-CGCCGUCGg -3'
miRNA:   3'- -CGCUGCgc-----CUGGCAgCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 34451 0.72 0.594147
Target:  5'- gGCGcUGCGGGCCuggggGUCGUCGCCG-Ca- -3'
miRNA:   3'- -CGCuGCGCCUGG-----CAGCAGCGGCaGca -5'
14609 3' -59.6 NC_003521.1 + 126959 0.72 0.602643
Target:  5'- cCGcCGCGGaacccgcGCCGUCGUCGCCGg--- -3'
miRNA:   3'- cGCuGCGCC-------UGGCAGCAGCGGCagca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.