miRNA display CGI


Results 1 - 20 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 220652 1.08 0.003359
Target:  5'- cGCGACGCGGACCGUCGUCGCCGUCGUc -3'
miRNA:   3'- -CGCUGCGCCUGGCAGCAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 160335 0.79 0.263302
Target:  5'- gGCGGCGCGGuggccuCCGUCGUCGagggCGUCGc -3'
miRNA:   3'- -CGCUGCGCCu-----GGCAGCAGCg---GCAGCa -5'
14609 3' -59.6 NC_003521.1 + 212667 0.79 0.27511
Target:  5'- gGCGuCGCGGGCaugGUCGcCGCCGUCGc -3'
miRNA:   3'- -CGCuGCGCCUGg--CAGCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 29737 0.77 0.346205
Target:  5'- cGCGACGgacaggcaggaaGGAUCGUCGUCGCCG-CGa -3'
miRNA:   3'- -CGCUGCg-----------CCUGGCAGCAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 226770 0.76 0.3772
Target:  5'- uGCGGa-CGGACCGUaGUCGUCGUCGUc -3'
miRNA:   3'- -CGCUgcGCCUGGCAgCAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 6864 0.76 0.38485
Target:  5'- gGCGuggguaGCGGAuCCGUCGUCGUCGUgGUu -3'
miRNA:   3'- -CGCug----CGCCU-GGCAGCAGCGGCAgCA- -5'
14609 3' -59.6 NC_003521.1 + 71062 0.76 0.38485
Target:  5'- cGCGGCGCcauGGGCCGaCGUUGCUGaUCGUa -3'
miRNA:   3'- -CGCUGCG---CCUGGCaGCAGCGGC-AGCA- -5'
14609 3' -59.6 NC_003521.1 + 23645 0.75 0.416457
Target:  5'- gGCGGCaUGGACCGUCGUCGuuGgcaggucaUCGUa -3'
miRNA:   3'- -CGCUGcGCCUGGCAGCAGCggC--------AGCA- -5'
14609 3' -59.6 NC_003521.1 + 98067 0.75 0.424603
Target:  5'- cGCgGACGCuGGucaccCCGUCGUCGCCuUCGUa -3'
miRNA:   3'- -CG-CUGCG-CCu----GGCAGCAGCGGcAGCA- -5'
14609 3' -59.6 NC_003521.1 + 118212 0.74 0.475389
Target:  5'- aGCG-CGCGGccGCCGcCGUCGCCGggGUg -3'
miRNA:   3'- -CGCuGCGCC--UGGCaGCAGCGGCagCA- -5'
14609 3' -59.6 NC_003521.1 + 121032 0.74 0.492983
Target:  5'- gGCGGCGCcGACC-UCGUCGCCGcugCGc -3'
miRNA:   3'- -CGCUGCGcCUGGcAGCAGCGGCa--GCa -5'
14609 3' -59.6 NC_003521.1 + 209724 0.74 0.492983
Target:  5'- uGCGcCGCGuGuaccggccgccGCCGUCGUCGCUGUUGg -3'
miRNA:   3'- -CGCuGCGC-C-----------UGGCAGCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 127035 0.73 0.510871
Target:  5'- cGCGgugcccgucGCGCuGGCCGUCGcCGUCGUCGa -3'
miRNA:   3'- -CGC---------UGCGcCUGGCAGCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 217548 0.73 0.529023
Target:  5'- -gGAaGCGGuGCaCGUCGUCGCCGUCa- -3'
miRNA:   3'- cgCUgCGCC-UG-GCAGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 211419 0.73 0.538188
Target:  5'- cGgGGCcCGGACUGUCcUCGUCGUCGUc -3'
miRNA:   3'- -CgCUGcGCCUGGCAGcAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 68700 0.73 0.547408
Target:  5'- cGCGACGaacucauGACCGUgG-CGCCGUCGg -3'
miRNA:   3'- -CGCUGCgc-----CUGGCAgCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 165994 0.73 0.556676
Target:  5'- -aGGCGCGGgacGCCGUCGcgcucggCGCCGUCc- -3'
miRNA:   3'- cgCUGCGCC---UGGCAGCa------GCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 161142 0.72 0.575342
Target:  5'- cGCGGcCGCGGGCgGUCG-CGgaCGUCGUu -3'
miRNA:   3'- -CGCU-GCGCCUGgCAGCaGCg-GCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 84728 0.72 0.575342
Target:  5'- -aGACGCGGgcacuGCCGUCGUCGUCuugcUCGg -3'
miRNA:   3'- cgCUGCGCC-----UGGCAGCAGCGGc---AGCa -5'
14609 3' -59.6 NC_003521.1 + 34451 0.72 0.594147
Target:  5'- gGCGcUGCGGGCCuggggGUCGUCGCCG-Ca- -3'
miRNA:   3'- -CGCuGCGCCUGG-----CAGCAGCGGCaGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.