miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 150364 0.66 0.891604
Target:  5'- uGCG-UGCGGACCGUgGUCGaCUG-Cu- -3'
miRNA:   3'- -CGCuGCGCCUGGCAgCAGC-GGCaGca -5'
14609 3' -59.6 NC_003521.1 + 76421 0.66 0.878805
Target:  5'- gGUGugGUGGugcuggcgACCGUUGUCGuugggguuaCCGUCGc -3'
miRNA:   3'- -CGCugCGCC--------UGGCAGCAGC---------GGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 221848 0.66 0.909329
Target:  5'- cGCGGCGCGuccucGACCcccuccucGUUGUCGCUGggGUa -3'
miRNA:   3'- -CGCUGCGC-----CUGG--------CAGCAGCGGCagCA- -5'
14609 3' -59.6 NC_003521.1 + 100256 0.66 0.897711
Target:  5'- cCGACGaCGaGCUGUCGcCGCCGcCGc -3'
miRNA:   3'- cGCUGC-GCcUGGCAGCaGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 166575 0.66 0.909329
Target:  5'- aGCGACuccaGGAacCCGUCGUCcaCCGUCa- -3'
miRNA:   3'- -CGCUGcg--CCU--GGCAGCAGc-GGCAGca -5'
14609 3' -59.6 NC_003521.1 + 97378 0.66 0.889733
Target:  5'- aGCGaACGCaGAaaacacaacaacggUCGgaggaUCGUCGCCGUCGg -3'
miRNA:   3'- -CGC-UGCGcCU--------------GGC-----AGCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 191090 0.66 0.90362
Target:  5'- gGCGGCgGCGGGCUG-CGUC-UCGUCc- -3'
miRNA:   3'- -CGCUG-CGCCUGGCaGCAGcGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 127068 0.66 0.909329
Target:  5'- -nGACGCGGcCUGUCGgucaGCCGcCa- -3'
miRNA:   3'- cgCUGCGCCuGGCAGCag--CGGCaGca -5'
14609 3' -59.6 NC_003521.1 + 74739 0.66 0.897711
Target:  5'- uCGuCGuCGGucucCCGacuggCGUCGCCGUCGa -3'
miRNA:   3'- cGCuGC-GCCu---GGCa----GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 5509 0.66 0.911556
Target:  5'- -aGAgGCGGuguagccgucgcauCUGUCGUCGCCaGUUGg -3'
miRNA:   3'- cgCUgCGCCu-------------GGCAGCAGCGG-CAGCa -5'
14609 3' -59.6 NC_003521.1 + 117252 0.66 0.903039
Target:  5'- gGCGcCGCcGccaucccgccaccGCCGUCGUCGgCCGUgGUg -3'
miRNA:   3'- -CGCuGCGcC-------------UGGCAGCAGC-GGCAgCA- -5'
14609 3' -59.6 NC_003521.1 + 98738 0.66 0.897711
Target:  5'- uGCcGCGgGGGUgGUCGUCGuaGUCGUa -3'
miRNA:   3'- -CGcUGCgCCUGgCAGCAGCggCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 142753 0.66 0.909329
Target:  5'- gGCGACGaCGGGgugaccagcguCCG-CGgcggCGUCGUCGg -3'
miRNA:   3'- -CGCUGC-GCCU-----------GGCaGCa---GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 74812 0.66 0.885301
Target:  5'- -aGACGCGGACgGaCGgCGCCGagcgCGa -3'
miRNA:   3'- cgCUGCGCCUGgCaGCaGCGGCa---GCa -5'
14609 3' -59.6 NC_003521.1 + 101377 0.66 0.897711
Target:  5'- gGUG-CGCGaGCCGUCG-CGCCGcUUGa -3'
miRNA:   3'- -CGCuGCGCcUGGCAGCaGCGGC-AGCa -5'
14609 3' -59.6 NC_003521.1 + 210917 0.66 0.885301
Target:  5'- uUGACGgccaCGGGUCGUCgGUCGUCGUCGc -3'
miRNA:   3'- cGCUGC----GCCUGGCAG-CAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 167606 0.66 0.885301
Target:  5'- uCGugGUGGcguUgGUCGUCGUCGUCc- -3'
miRNA:   3'- cGCugCGCCu--GgCAGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 168372 0.66 0.88466
Target:  5'- aGCGGCagucgGCGGGCaggauguagguggCGUUGcCGCCGUUGg -3'
miRNA:   3'- -CGCUG-----CGCCUG-------------GCAGCaGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 126562 0.66 0.885301
Target:  5'- cGCGAaggcCGUGGGCag-CGggaagcCGCCGUCGUg -3'
miRNA:   3'- -CGCU----GCGCCUGgcaGCa-----GCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 19063 0.66 0.885301
Target:  5'- gGCGGCGCGGcgcagaCGcUGaCGCUGUCGUu -3'
miRNA:   3'- -CGCUGCGCCug----GCaGCaGCGGCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.