miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 126959 0.72 0.602643
Target:  5'- cCGcCGCGGaacccgcGCCGUCGUCGCCGg--- -3'
miRNA:   3'- cGCuGCGCC-------UGGCAGCAGCGGCagca -5'
14609 3' -59.6 NC_003521.1 + 98127 0.72 0.603587
Target:  5'- cGCGGCaGCGGAguCCGUgGUagcugcugcCGCCGUCGc -3'
miRNA:   3'- -CGCUG-CGCCU--GGCAgCA---------GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 224011 0.72 0.603588
Target:  5'- uGCGGCagcgGCGGGCCcggcgGUCGgggcgggCGCCGUCGc -3'
miRNA:   3'- -CGCUG----CGCCUGG-----CAGCa------GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 118927 0.72 0.613046
Target:  5'- cGCGGCGUGGGCgGcggCGUC-CCGUCa- -3'
miRNA:   3'- -CGCUGCGCCUGgCa--GCAGcGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 20174 0.72 0.613046
Target:  5'- gGCGACGaCGGuCCG-CGUCGCgacgucauCGUCGg -3'
miRNA:   3'- -CGCUGC-GCCuGGCaGCAGCG--------GCAGCa -5'
14609 3' -59.6 NC_003521.1 + 183055 0.72 0.613046
Target:  5'- gGCGAuUGUGGGa--UCGUCGCCGUCGg -3'
miRNA:   3'- -CGCU-GCGCCUggcAGCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 127884 0.71 0.62157
Target:  5'- cGCGGCgugcacaGCGGcACCGUC-UCGCUGUUGUc -3'
miRNA:   3'- -CGCUG-------CGCC-UGGCAGcAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 85286 0.71 0.631048
Target:  5'- gGCuGACGUGGA-CGUuaauauagaaccaCGUCGCCGUCGc -3'
miRNA:   3'- -CG-CUGCGCCUgGCA-------------GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 97272 0.71 0.631995
Target:  5'- aGCGAUgGCGGcuGCUGcUCGUCGCCGgCGg -3'
miRNA:   3'- -CGCUG-CGCC--UGGC-AGCAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 110919 0.71 0.631995
Target:  5'- aGCaGGCGCGcGGCCGcccCGUCGUCGUCc- -3'
miRNA:   3'- -CG-CUGCGC-CUGGCa--GCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 102596 0.71 0.641473
Target:  5'- gGCuGGCGCuGGCCa-CGUCGUCGUCGUg -3'
miRNA:   3'- -CG-CUGCGcCUGGcaGCAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 172460 0.71 0.650944
Target:  5'- gGgGAgGCaGGGCCGgcagCGgugCGCCGUCGg -3'
miRNA:   3'- -CgCUgCG-CCUGGCa---GCa--GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 90412 0.71 0.650944
Target:  5'- cGCGACaGaCGGGuCCGggcUCGUCGCCGcCGa -3'
miRNA:   3'- -CGCUG-C-GCCU-GGC---AGCAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 107437 0.71 0.660402
Target:  5'- cGCGaaaGCGCGGACCGcCG-CGCUGUgcCGg -3'
miRNA:   3'- -CGC---UGCGCCUGGCaGCaGCGGCA--GCa -5'
14609 3' -59.6 NC_003521.1 + 77515 0.71 0.660403
Target:  5'- cGCGcCGCuGACCGUgGacaCGCCGUCGc -3'
miRNA:   3'- -CGCuGCGcCUGGCAgCa--GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 168936 0.71 0.660403
Target:  5'- -gGGCGCaggcaGGGCCGccgcUGUCGCCGUCGc -3'
miRNA:   3'- cgCUGCG-----CCUGGCa---GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 103226 0.71 0.669841
Target:  5'- aGCG-CGCGGuacaggucgGCC-UCGUUGUCGUCGUa -3'
miRNA:   3'- -CGCuGCGCC---------UGGcAGCAGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 124097 0.7 0.679254
Target:  5'- aCGGCGUGGGCgGgaagcagcgCGUCGCUGUgGUg -3'
miRNA:   3'- cGCUGCGCCUGgCa--------GCAGCGGCAgCA- -5'
14609 3' -59.6 NC_003521.1 + 111250 0.7 0.688633
Target:  5'- cGCGGCGCGGcggagcagccAUCGUCGggccCGCCGUg-- -3'
miRNA:   3'- -CGCUGCGCC----------UGGCAGCa---GCGGCAgca -5'
14609 3' -59.6 NC_003521.1 + 233181 0.7 0.697973
Target:  5'- cCGugGCGG-CCGcCGUUaCCGUCGg -3'
miRNA:   3'- cGCugCGCCuGGCaGCAGcGGCAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.