Results 21 - 40 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14609 | 3' | -59.6 | NC_003521.1 | + | 74588 | 0.7 | 0.725678 |
Target: 5'- gGCGGCGCGGcgucccgcgGCCGgcgCGccUCGCCGcCGc -3' miRNA: 3'- -CGCUGCGCC---------UGGCa--GC--AGCGGCaGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 164451 | 0.7 | 0.725678 |
Target: 5'- cGCGGcCGCGG-CCGUCacgGUCGCCGcUGc -3' miRNA: 3'- -CGCU-GCGCCuGGCAG---CAGCGGCaGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 126959 | 0.72 | 0.602643 |
Target: 5'- cCGcCGCGGaacccgcGCCGUCGUCGCCGg--- -3' miRNA: 3'- cGCuGCGCC-------UGGCAGCAGCGGCagca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 34451 | 0.72 | 0.594147 |
Target: 5'- gGCGcUGCGGGCCuggggGUCGUCGCCG-Ca- -3' miRNA: 3'- -CGCuGCGCCUGG-----CAGCAGCGGCaGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 68700 | 0.73 | 0.547408 |
Target: 5'- cGCGACGaacucauGACCGUgG-CGCCGUCGg -3' miRNA: 3'- -CGCUGCgc-----CUGGCAgCaGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 217548 | 0.73 | 0.529023 |
Target: 5'- -gGAaGCGGuGCaCGUCGUCGCCGUCa- -3' miRNA: 3'- cgCUgCGCC-UG-GCAGCAGCGGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 127035 | 0.73 | 0.510871 |
Target: 5'- cGCGgugcccgucGCGCuGGCCGUCGcCGUCGUCGa -3' miRNA: 3'- -CGC---------UGCGcCUGGCAGCaGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 121032 | 0.74 | 0.492983 |
Target: 5'- gGCGGCGCcGACC-UCGUCGCCGcugCGc -3' miRNA: 3'- -CGCUGCGcCUGGcAGCAGCGGCa--GCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 118212 | 0.74 | 0.475389 |
Target: 5'- aGCG-CGCGGccGCCGcCGUCGCCGggGUg -3' miRNA: 3'- -CGCuGCGCC--UGGCaGCAGCGGCagCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 71062 | 0.76 | 0.38485 |
Target: 5'- cGCGGCGCcauGGGCCGaCGUUGCUGaUCGUa -3' miRNA: 3'- -CGCUGCG---CCUGGCaGCAGCGGC-AGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 224011 | 0.72 | 0.603588 |
Target: 5'- uGCGGCagcgGCGGGCCcggcgGUCGgggcgggCGCCGUCGc -3' miRNA: 3'- -CGCUG----CGCCUGG-----CAGCa------GCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 118927 | 0.72 | 0.613046 |
Target: 5'- cGCGGCGUGGGCgGcggCGUC-CCGUCa- -3' miRNA: 3'- -CGCUGCGCCUGgCa--GCAGcGGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 179991 | 0.7 | 0.725678 |
Target: 5'- uGCucuCGCGGGCCGcCGUCGUggcauccuCGUCGa -3' miRNA: 3'- -CGcu-GCGCCUGGCaGCAGCG--------GCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 233181 | 0.7 | 0.697973 |
Target: 5'- cCGugGCGG-CCGcCGUUaCCGUCGg -3' miRNA: 3'- cGCugCGCCuGGCaGCAGcGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 124097 | 0.7 | 0.679254 |
Target: 5'- aCGGCGUGGGCgGgaagcagcgCGUCGCUGUgGUg -3' miRNA: 3'- cGCUGCGCCUGgCa--------GCAGCGGCAgCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 77515 | 0.71 | 0.660403 |
Target: 5'- cGCGcCGCuGACCGUgGacaCGCCGUCGc -3' miRNA: 3'- -CGCuGCGcCUGGCAgCa--GCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 168936 | 0.71 | 0.660403 |
Target: 5'- -gGGCGCaggcaGGGCCGccgcUGUCGCCGUCGc -3' miRNA: 3'- cgCUGCG-----CCUGGCa---GCAGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 102596 | 0.71 | 0.641473 |
Target: 5'- gGCuGGCGCuGGCCa-CGUCGUCGUCGUg -3' miRNA: 3'- -CG-CUGCGcCUGGcaGCAGCGGCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 85286 | 0.71 | 0.631048 |
Target: 5'- gGCuGACGUGGA-CGUuaauauagaaccaCGUCGCCGUCGc -3' miRNA: 3'- -CG-CUGCGCCUgGCA-------------GCAGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 127884 | 0.71 | 0.62157 |
Target: 5'- cGCGGCgugcacaGCGGcACCGUC-UCGCUGUUGUc -3' miRNA: 3'- -CGCUG-------CGCC-UGGCAGcAGCGGCAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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