Results 1 - 20 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14609 | 3' | -59.6 | NC_003521.1 | + | 160335 | 0.79 | 0.263302 |
Target: 5'- gGCGGCGCGGuggccuCCGUCGUCGagggCGUCGc -3' miRNA: 3'- -CGCUGCGCCu-----GGCAGCAGCg---GCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 172460 | 0.71 | 0.650944 |
Target: 5'- gGgGAgGCaGGGCCGgcagCGgugCGCCGUCGg -3' miRNA: 3'- -CgCUgCG-CCUGGCa---GCa--GCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 107437 | 0.71 | 0.660402 |
Target: 5'- cGCGaaaGCGCGGACCGcCG-CGCUGUgcCGg -3' miRNA: 3'- -CGC---UGCGCCUGGCaGCaGCGGCA--GCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 5509 | 0.66 | 0.911556 |
Target: 5'- -aGAgGCGGuguagccgucgcauCUGUCGUCGCCaGUUGg -3' miRNA: 3'- cgCUgCGCCu-------------GGCAGCAGCGG-CAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 6864 | 0.76 | 0.38485 |
Target: 5'- gGCGuggguaGCGGAuCCGUCGUCGUCGUgGUu -3' miRNA: 3'- -CGCug----CGCCU-GGCAGCAGCGGCAgCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 23645 | 0.75 | 0.416457 |
Target: 5'- gGCGGCaUGGACCGUCGUCGuuGgcaggucaUCGUa -3' miRNA: 3'- -CGCUGcGCCUGGCAGCAGCggC--------AGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 209724 | 0.74 | 0.492983 |
Target: 5'- uGCGcCGCGuGuaccggccgccGCCGUCGUCGCUGUUGg -3' miRNA: 3'- -CGCuGCGC-C-----------UGGCAGCAGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 211419 | 0.73 | 0.538188 |
Target: 5'- cGgGGCcCGGACUGUCcUCGUCGUCGUc -3' miRNA: 3'- -CgCUGcGCCUGGCAGcAGCGGCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 161142 | 0.72 | 0.575342 |
Target: 5'- cGCGGcCGCGGGCgGUCG-CGgaCGUCGUu -3' miRNA: 3'- -CGCU-GCGCCUGgCAGCaGCg-GCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 97272 | 0.71 | 0.631995 |
Target: 5'- aGCGAUgGCGGcuGCUGcUCGUCGCCGgCGg -3' miRNA: 3'- -CGCUG-CGCC--UGGC-AGCAGCGGCaGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 20174 | 0.72 | 0.613046 |
Target: 5'- gGCGACGaCGGuCCG-CGUCGCgacgucauCGUCGg -3' miRNA: 3'- -CGCUGC-GCCuGGCaGCAGCG--------GCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 84728 | 0.72 | 0.575342 |
Target: 5'- -aGACGCGGgcacuGCCGUCGUCGUCuugcUCGg -3' miRNA: 3'- cgCUGCGCC-----UGGCAGCAGCGGc---AGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 212667 | 0.79 | 0.27511 |
Target: 5'- gGCGuCGCGGGCaugGUCGcCGCCGUCGc -3' miRNA: 3'- -CGCuGCGCCUGg--CAGCaGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 183055 | 0.72 | 0.613046 |
Target: 5'- gGCGAuUGUGGGa--UCGUCGCCGUCGg -3' miRNA: 3'- -CGCU-GCGCCUggcAGCAGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 29737 | 0.77 | 0.346205 |
Target: 5'- cGCGACGgacaggcaggaaGGAUCGUCGUCGCCG-CGa -3' miRNA: 3'- -CGCUGCg-----------CCUGGCAGCAGCGGCaGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 165994 | 0.73 | 0.556676 |
Target: 5'- -aGGCGCGGgacGCCGUCGcgcucggCGCCGUCc- -3' miRNA: 3'- cgCUGCGCC---UGGCAGCa------GCGGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 110919 | 0.71 | 0.631995 |
Target: 5'- aGCaGGCGCGcGGCCGcccCGUCGUCGUCc- -3' miRNA: 3'- -CG-CUGCGC-CUGGCa--GCAGCGGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 90412 | 0.71 | 0.650944 |
Target: 5'- cGCGACaGaCGGGuCCGggcUCGUCGCCGcCGa -3' miRNA: 3'- -CGCUG-C-GCCU-GGC---AGCAGCGGCaGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 226770 | 0.76 | 0.3772 |
Target: 5'- uGCGGa-CGGACCGUaGUCGUCGUCGUc -3' miRNA: 3'- -CGCUgcGCCUGGCAgCAGCGGCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 98067 | 0.75 | 0.424603 |
Target: 5'- cGCgGACGCuGGucaccCCGUCGUCGCCuUCGUa -3' miRNA: 3'- -CG-CUGCG-CCu----GGCAGCAGCGGcAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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