miRNA display CGI


Results 61 - 80 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 57370 0.72 0.675673
Target:  5'- cGCCGCCGUgacgCGCCAgggcguCGAUCUcGCgCCACa -3'
miRNA:   3'- -CGGUGGUA----GUGGU------GCUAGA-CGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 112258 0.7 0.780098
Target:  5'- uGCCGCCgucccaggggaGUCACgGCGGcacUCUGCCagaaCACg -3'
miRNA:   3'- -CGGUGG-----------UAGUGgUGCU---AGACGGg---GUG- -5'
14611 3' -56.7 NC_003521.1 + 156719 0.7 0.780098
Target:  5'- aCCACUAUCgACUACGGcCUGaCCUCGCg -3'
miRNA:   3'- cGGUGGUAG-UGGUGCUaGAC-GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 118098 0.7 0.771061
Target:  5'- cGgCGCCGUCGcCCACGAccacgaccgccUCcaGCCCCGCc -3'
miRNA:   3'- -CgGUGGUAGU-GGUGCU-----------AGa-CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 164493 0.7 0.771061
Target:  5'- cGUCACCGUCGCCucCGcagCUGUCgCCGCc -3'
miRNA:   3'- -CGGUGGUAGUGGu-GCua-GACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 146285 0.7 0.77015
Target:  5'- uCUACCGUUcuagaucguuggaGCCGCGAUCUcUCCCGCa -3'
miRNA:   3'- cGGUGGUAG-------------UGGUGCUAGAcGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 165801 0.7 0.761907
Target:  5'- cGCUGCCGUCGCaguaGgGGUcCUGgCCCACg -3'
miRNA:   3'- -CGGUGGUAGUGg---UgCUA-GACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 152955 0.7 0.761907
Target:  5'- uCCACCugCGCCuCGAUCUGCUCCu- -3'
miRNA:   3'- cGGUGGuaGUGGuGCUAGACGGGGug -5'
14611 3' -56.7 NC_003521.1 + 56034 0.71 0.752646
Target:  5'- gGCCACCAgggCGuCCaggcGCGcgUUGCCCCAg -3'
miRNA:   3'- -CGGUGGUa--GU-GG----UGCuaGACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 164445 0.71 0.744225
Target:  5'- cGCCACCGcgGCCGCGGccgucacggucgccgCUGCCgCCGCc -3'
miRNA:   3'- -CGGUGGUagUGGUGCUa--------------GACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 142348 0.71 0.733833
Target:  5'- cGCCGCCAcggcCGCCGCGG-CcGCCgCCGCc -3'
miRNA:   3'- -CGGUGGUa---GUGGUGCUaGaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 133647 0.71 0.733833
Target:  5'- aGCUGCUG-CugCugGAcCUGCCCCGCc -3'
miRNA:   3'- -CGGUGGUaGugGugCUaGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 127336 0.71 0.724298
Target:  5'- gGCUGCCgGUCgGCCACGAUCUGCacgCCCu- -3'
miRNA:   3'- -CGGUGG-UAG-UGGUGCUAGACG---GGGug -5'
14611 3' -56.7 NC_003521.1 + 127797 0.71 0.714688
Target:  5'- aGCCGCaCGUgCuCCAUGAUCUGCCaggCGCg -3'
miRNA:   3'- -CGGUG-GUA-GuGGUGCUAGACGGg--GUG- -5'
14611 3' -56.7 NC_003521.1 + 171103 0.71 0.705013
Target:  5'- cCCGCCGUUACCGCGuaccUCaggGCCgCCGCc -3'
miRNA:   3'- cGGUGGUAGUGGUGCu---AGa--CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 75223 0.71 0.705013
Target:  5'- cGCCGCCA--ACCACGAcaUCgUGCCCUucauGCa -3'
miRNA:   3'- -CGGUGGUagUGGUGCU--AG-ACGGGG----UG- -5'
14611 3' -56.7 NC_003521.1 + 44005 0.72 0.685497
Target:  5'- gGCCugCucaACCACGGcCUGCCCuCGCc -3'
miRNA:   3'- -CGGugGuagUGGUGCUaGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 189996 0.72 0.684516
Target:  5'- aGCCGCCGUCACCGCucccaccaccgggGAcaccgCUGCCaUCACc -3'
miRNA:   3'- -CGGUGGUAGUGGUG-------------CUa----GACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 222165 0.72 0.675673
Target:  5'- cGCCcCCGUgGCCAgcaGGUCcgugcgGCCCCACg -3'
miRNA:   3'- -CGGuGGUAgUGGUg--CUAGa-----CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 152459 0.72 0.675673
Target:  5'- uGCUAUCGUCauaggcggcgGCCACGAUCU-CCCCGa -3'
miRNA:   3'- -CGGUGGUAG----------UGGUGCUAGAcGGGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.