miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 138906 0.69 0.839432
Target:  5'- aCCACCAcgGCCGCucGGUgcgcCUGCCCUACa -3'
miRNA:   3'- cGGUGGUagUGGUG--CUA----GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 165043 0.73 0.63612
Target:  5'- uGCCGCgGcgucugCACCugGAggcggccuuUCUGCCCUACa -3'
miRNA:   3'- -CGGUGgUa-----GUGGugCU---------AGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 107298 0.7 0.780098
Target:  5'- gGCCGucgaaaaucuCCGaaUCGCCGCGGguuggGCCCCGCa -3'
miRNA:   3'- -CGGU----------GGU--AGUGGUGCUaga--CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 80268 0.7 0.797791
Target:  5'- aCCACCAcuaguaucgCGCCGCGucUCUGUCuCCGCg -3'
miRNA:   3'- cGGUGGUa--------GUGGUGCu-AGACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 167977 0.7 0.80643
Target:  5'- uGCCuACCGUCGCCGCGcccagGCCgUCGCg -3'
miRNA:   3'- -CGG-UGGUAGUGGUGCuaga-CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 19791 0.73 0.606397
Target:  5'- cGCCAUgAUCGCCACGGUggugCUGUUCUGCu -3'
miRNA:   3'- -CGGUGgUAGUGGUGCUA----GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 193255 0.72 0.685497
Target:  5'- cGCCACCGUgGCCcgcuCGccGUCUuCCCCGCu -3'
miRNA:   3'- -CGGUGGUAgUGGu---GC--UAGAcGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 181207 0.71 0.752646
Target:  5'- aGCCGCgGUCGCCGcCGGggCcGCCgCCACu -3'
miRNA:   3'- -CGGUGgUAGUGGU-GCUa-GaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 23427 0.7 0.761907
Target:  5'- uGCCGCCGcUCAgccuggcggugcCCACGGUgUGCCUgGCc -3'
miRNA:   3'- -CGGUGGU-AGU------------GGUGCUAgACGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 49454 0.71 0.705014
Target:  5'- -aCGCCGUCugCGCGcuUCUGCUCaCACu -3'
miRNA:   3'- cgGUGGUAGugGUGCu-AGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 26008 0.75 0.528376
Target:  5'- aCCGCCGUCGCCGCGccCggcGCCCgACg -3'
miRNA:   3'- cGGUGGUAGUGGUGCuaGa--CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 26380 0.75 0.528376
Target:  5'- cGCCGCCGUCAUCAacuUCUGCagcaccgucaCCCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUgcuAGACG----------GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 25385 0.69 0.847257
Target:  5'- uGgCGCCAgCAcCCGCGGcUCUGCUUCACg -3'
miRNA:   3'- -CgGUGGUaGU-GGUGCU-AGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 227916 0.68 0.869611
Target:  5'- cGCCACCAgCGCCAgGcuGUCUGUgguaguCCCAg -3'
miRNA:   3'- -CGGUGGUaGUGGUgC--UAGACG------GGGUg -5'
14611 3' -56.7 NC_003521.1 + 22124 0.68 0.883522
Target:  5'- cGCCGCCGUCuccuCCGCcuUC-GCCgCCGCc -3'
miRNA:   3'- -CGGUGGUAGu---GGUGcuAGaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 125377 0.68 0.890167
Target:  5'- aCCACCGUCcgcacaACCACcGUCacCCCCGCg -3'
miRNA:   3'- cGGUGGUAG------UGGUGcUAGacGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 8619 0.68 0.876669
Target:  5'- aGCCACCAcCAcCCGCGGg--GgCCCAUg -3'
miRNA:   3'- -CGGUGGUaGU-GGUGCUagaCgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 12089 0.69 0.839432
Target:  5'- cGCCGCUGcUCACCACGca--GCCCgACa -3'
miRNA:   3'- -CGGUGGU-AGUGGUGCuagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 212848 0.68 0.8549
Target:  5'- uGCCGCCGUgGCCGUGAgcgCcGCCUgGCg -3'
miRNA:   3'- -CGGUGGUAgUGGUGCUa--GaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 53991 0.68 0.862353
Target:  5'- gGCCGCCAUUcgcaggACCGucaGAUCUGgucgCCCACg -3'
miRNA:   3'- -CGGUGGUAG------UGGUg--CUAGACg---GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.