miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 26380 0.75 0.528376
Target:  5'- cGCCGCCGUCAUCAacuUCUGCagcaccgucaCCCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUgcuAGACG----------GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 13880 0.7 0.797791
Target:  5'- cGCCGCCAuggauuUCGCCGgGGg--GCCCgGCg -3'
miRNA:   3'- -CGGUGGU------AGUGGUgCUagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 25385 0.69 0.847257
Target:  5'- uGgCGCCAgCAcCCGCGGcUCUGCUUCACg -3'
miRNA:   3'- -CgGUGGUaGU-GGUGCU-AGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 138906 0.69 0.839432
Target:  5'- aCCACCAcgGCCGCucGGUgcgcCUGCCCUACa -3'
miRNA:   3'- cGGUGGUagUGGUG--CUA----GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 158069 0.7 0.780098
Target:  5'- cCCGCCgGUCGCgCGUGAUCUcGUCCCGCa -3'
miRNA:   3'- cGGUGG-UAGUG-GUGCUAGA-CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 17656 0.73 0.63612
Target:  5'- cGCCagcACCGgggCACCACGGUg-GCCCUGCg -3'
miRNA:   3'- -CGG---UGGUa--GUGGUGCUAgaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 26008 0.75 0.528376
Target:  5'- aCCGCCGUCGCCGCGccCggcGCCCgACg -3'
miRNA:   3'- cGGUGGUAGUGGUGCuaGa--CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 23602 0.75 0.518855
Target:  5'- gGCCugCAUCcucuUCGCGAUCUGCaCCGCc -3'
miRNA:   3'- -CGGugGUAGu---GGUGCUAGACGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 98154 0.72 0.69528
Target:  5'- uGCCGCCGUCGCUgcugACGGcgCUGCgCCGa -3'
miRNA:   3'- -CGGUGGUAGUGG----UGCUa-GACGgGGUg -5'
14611 3' -56.7 NC_003521.1 + 171421 0.7 0.761907
Target:  5'- cGUCACCGUC-CCGCG-UCUGCugcguCUCACg -3'
miRNA:   3'- -CGGUGGUAGuGGUGCuAGACG-----GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 95238 0.71 0.714689
Target:  5'- gGCCACgGcCGCCGCG-UCgUGCCgCCGCa -3'
miRNA:   3'- -CGGUGgUaGUGGUGCuAG-ACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 113446 0.72 0.655932
Target:  5'- gGCCGCCcuUCAUCACGcacCUGCCgCGCa -3'
miRNA:   3'- -CGGUGGu-AGUGGUGCua-GACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 31269 0.74 0.58666
Target:  5'- cGCCACCGUCGCCGCca----CCCCGCc -3'
miRNA:   3'- -CGGUGGUAGUGGUGcuagacGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 203353 0.69 0.823257
Target:  5'- cCCugCggCACCACGGUg-GCCCgCGCg -3'
miRNA:   3'- cGGugGuaGUGGUGCUAgaCGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 80316 0.69 0.814921
Target:  5'- uGCCGCCcccuccuccCGCCGCGGUCUGCUguguCCGu -3'
miRNA:   3'- -CGGUGGua-------GUGGUGCUAGACGG----GGUg -5'
14611 3' -56.7 NC_003521.1 + 180151 0.7 0.780098
Target:  5'- cGCgGCCG-CAgCACGAagagcaUCgUGCCCCACu -3'
miRNA:   3'- -CGgUGGUaGUgGUGCU------AG-ACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 160054 0.69 0.839432
Target:  5'- -gCACUAUCGCCACGGUCgacaGCaugaUCGCg -3'
miRNA:   3'- cgGUGGUAGUGGUGCUAGa---CGg---GGUG- -5'
14611 3' -56.7 NC_003521.1 + 23493 0.66 0.948749
Target:  5'- gGCCGCCGUcCGCCaccgugcugACGAUCUacagcgugGUCaCCACc -3'
miRNA:   3'- -CGGUGGUA-GUGG---------UGCUAGA--------CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 141877 0.69 0.847257
Target:  5'- aGCCGCCAcCACC-CGucuccgcUCgGUCCCGCg -3'
miRNA:   3'- -CGGUGGUaGUGGuGCu------AGaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 195122 0.69 0.83143
Target:  5'- cGUCAUCGUCGCCGCGGUacgGUgUCCGCu -3'
miRNA:   3'- -CGGUGGUAGUGGUGCUAga-CG-GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.