miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 135667 0.66 0.935446
Target:  5'- aGCCcCCGUCGCCugGAauuggUCUccgGCCUCu- -3'
miRNA:   3'- -CGGuGGUAGUGGugCU-----AGA---CGGGGug -5'
14611 3' -56.7 NC_003521.1 + 190061 0.66 0.940102
Target:  5'- cGCCGCgCGgucuUCACgUACGuUCUGgCCCGCu -3'
miRNA:   3'- -CGGUG-GU----AGUG-GUGCuAGACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 129651 0.66 0.948749
Target:  5'- cGgCGCCGUCGCCGgGG-CgGCCgCGCu -3'
miRNA:   3'- -CgGUGGUAGUGGUgCUaGaCGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 100793 0.66 0.948749
Target:  5'- uGCCGCCAUgGCCu---UCUGCggCCGCu -3'
miRNA:   3'- -CGGUGGUAgUGGugcuAGACGg-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 154219 0.66 0.935446
Target:  5'- uCUACCGcCACCACGAgcgcuUCUuCCCCGg -3'
miRNA:   3'- cGGUGGUaGUGGUGCU-----AGAcGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 127236 0.66 0.935446
Target:  5'- cGCCcCCGUUGCCccCGAggccCaGCCCCACc -3'
miRNA:   3'- -CGGuGGUAGUGGu-GCUa---GaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 214790 0.66 0.930567
Target:  5'- cGCCGCCGuccucuUCACCGCcGUCggGCgCCGg -3'
miRNA:   3'- -CGGUGGU------AGUGGUGcUAGa-CGgGGUg -5'
14611 3' -56.7 NC_003521.1 + 32880 0.66 0.948749
Target:  5'- uGgCGCCcgCGCCGcCGGUgCUGCCgCCGu -3'
miRNA:   3'- -CgGUGGuaGUGGU-GCUA-GACGG-GGUg -5'
14611 3' -56.7 NC_003521.1 + 75083 0.66 0.944102
Target:  5'- cGCCGCCGcccucccUCAacaacguguuCCGCGAggUGgCCCGCa -3'
miRNA:   3'- -CGGUGGU-------AGU----------GGUGCUagACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 153262 0.66 0.940102
Target:  5'- cGCCugcCCGUCAuCCACaagCUGCCCaagCGCg -3'
miRNA:   3'- -CGGu--GGUAGU-GGUGcuaGACGGG---GUG- -5'
14611 3' -56.7 NC_003521.1 + 235301 0.66 0.940102
Target:  5'- gGCUGCCGUCACCGuCGcugCUGCuacuCCUGCc -3'
miRNA:   3'- -CGGUGGUAGUGGU-GCua-GACG----GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 77070 0.66 0.935446
Target:  5'- cGCCGCCGUgagCGCCGCug-UUGCCgCCGg -3'
miRNA:   3'- -CGGUGGUA---GUGGUGcuaGACGG-GGUg -5'
14611 3' -56.7 NC_003521.1 + 176190 0.66 0.948749
Target:  5'- -aCACCGUCACCAauaGGgggCaGUCCCAa -3'
miRNA:   3'- cgGUGGUAGUGGUg--CUa--GaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 153532 0.66 0.948749
Target:  5'- cGCCugCAUCGcauCCugGAcuaCUGCCgCAa -3'
miRNA:   3'- -CGGugGUAGU---GGugCUa--GACGGgGUg -5'
14611 3' -56.7 NC_003521.1 + 168290 0.66 0.944536
Target:  5'- -aCACCGUCGCCGCc----GCCuCCGCa -3'
miRNA:   3'- cgGUGGUAGUGGUGcuagaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 168951 0.66 0.948749
Target:  5'- cGCCGCUGUCGCC---GUC-GCuCCCGCu -3'
miRNA:   3'- -CGGUGGUAGUGGugcUAGaCG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 234238 0.66 0.948749
Target:  5'- cGCC-CCAUCACUcUGAUCccuuuaCCCUACg -3'
miRNA:   3'- -CGGuGGUAGUGGuGCUAGac----GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 23493 0.66 0.948749
Target:  5'- gGCCGCCGUcCGCCaccgugcugACGAUCUacagcgugGUCaCCACc -3'
miRNA:   3'- -CGGUGGUA-GUGG---------UGCUAGA--------CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 22504 0.66 0.948749
Target:  5'- aCCACCGUgGCCACGGguuUCUGCg---- -3'
miRNA:   3'- cGGUGGUAgUGGUGCU---AGACGgggug -5'
14611 3' -56.7 NC_003521.1 + 137104 0.66 0.944536
Target:  5'- cGgCACCugaACCugGuuuUCcugUGCCCCACg -3'
miRNA:   3'- -CgGUGGuagUGGugCu--AG---ACGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.