miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 43562 0.67 0.914583
Target:  5'- cGCCGCCggCGCCGCG-UCaaGCaCCGCu -3'
miRNA:   3'- -CGGUGGuaGUGGUGCuAGa-CGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 44005 0.72 0.685497
Target:  5'- gGCCugCucaACCACGGcCUGCCCuCGCc -3'
miRNA:   3'- -CGGugGuagUGGUGCUaGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 44106 0.7 0.7774
Target:  5'- aCCACCGUCGCCGcCGGUgaagucggccgucgCUGCUCCu- -3'
miRNA:   3'- cGGUGGUAGUGGU-GCUA--------------GACGGGGug -5'
14611 3' -56.7 NC_003521.1 + 45429 0.77 0.386339
Target:  5'- cCCGCCGUCGgCGCGGUCaugGCCUCGCc -3'
miRNA:   3'- cGGUGGUAGUgGUGCUAGa--CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 45643 0.66 0.948749
Target:  5'- cGCCGCCGgcuCCGCGGg--GUCCgGCg -3'
miRNA:   3'- -CGGUGGUaguGGUGCUagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 48774 0.75 0.490724
Target:  5'- cGCCGCgGaCGCCGCG-UCUGCCgCGCa -3'
miRNA:   3'- -CGGUGgUaGUGGUGCuAGACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 49454 0.71 0.705014
Target:  5'- -aCGCCGUCugCGCGcuUCUGCUCaCACu -3'
miRNA:   3'- cgGUGGUAGugGUGCu-AGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 49749 0.76 0.472368
Target:  5'- cGCCGCCGcCACCACGGUC-GCCgCGg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUAGaCGGgGUg -5'
14611 3' -56.7 NC_003521.1 + 53588 0.67 0.920135
Target:  5'- gGCCGCCucgaagcUCACUugGcugaggcugCUGCUCCGCc -3'
miRNA:   3'- -CGGUGGu------AGUGGugCua-------GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 53991 0.68 0.862353
Target:  5'- gGCCGCCAUUcgcaggACCGucaGAUCUGgucgCCCACg -3'
miRNA:   3'- -CGGUGGUAG------UGGUg--CUAGACg---GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 54045 0.69 0.839431
Target:  5'- cGCCGCCGcCACCACcg-CcGCCuCCGCc -3'
miRNA:   3'- -CGGUGGUaGUGGUGcuaGaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 54175 0.68 0.876669
Target:  5'- uCCGCCAcCGCCGCGcgacGUCgacuUGCCgCCACc -3'
miRNA:   3'- cGGUGGUaGUGGUGC----UAG----ACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 54905 0.67 0.920135
Target:  5'- uGCgCACCGUUugCAgGAUCaGCgCCgGCg -3'
miRNA:   3'- -CG-GUGGUAGugGUgCUAGaCG-GGgUG- -5'
14611 3' -56.7 NC_003521.1 + 56034 0.71 0.752646
Target:  5'- gGCCACCAgggCGuCCaggcGCGcgUUGCCCCAg -3'
miRNA:   3'- -CGGUGGUa--GU-GG----UGCuaGACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 57370 0.72 0.675673
Target:  5'- cGCCGCCGUgacgCGCCAgggcguCGAUCUcGCgCCACa -3'
miRNA:   3'- -CGGUGGUA----GUGGU------GCUAGA-CGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 58461 0.66 0.944535
Target:  5'- cGCgCACCAcgUCgACCAgGGUCUGCCaauggcCCAg -3'
miRNA:   3'- -CG-GUGGU--AG-UGGUgCUAGACGG------GGUg -5'
14611 3' -56.7 NC_003521.1 + 59149 0.72 0.655932
Target:  5'- aGCUGCCGUCucuCUcCGAUCUcCCCCGCg -3'
miRNA:   3'- -CGGUGGUAGu--GGuGCUAGAcGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 59901 0.67 0.91959
Target:  5'- cGCCACCAUCgagcgGCCGCaguacaaGGUggGCuCCCACc -3'
miRNA:   3'- -CGGUGGUAG-----UGGUG-------CUAgaCG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 61906 0.67 0.908809
Target:  5'- cGUCGCCGUCAUCGUGGUCgGCgUUCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUGCUAGaCG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 62837 0.74 0.53796
Target:  5'- cGCCcuACCcgCACCGCcccaGGUgUGCCCCGCc -3'
miRNA:   3'- -CGG--UGGuaGUGGUG----CUAgACGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.