miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 23493 0.66 0.948749
Target:  5'- gGCCGCCGUcCGCCaccgugcugACGAUCUacagcgugGUCaCCACc -3'
miRNA:   3'- -CGGUGGUA-GUGG---------UGCUAGA--------CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 23602 0.75 0.518855
Target:  5'- gGCCugCAUCcucuUCGCGAUCUGCaCCGCc -3'
miRNA:   3'- -CGGugGUAGu---GGUGCUAGACGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 23641 0.69 0.814921
Target:  5'- uGCC-UCAUCACCACGAUCgcgguauuCCUCAUu -3'
miRNA:   3'- -CGGuGGUAGUGGUGCUAGac------GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 25385 0.69 0.847257
Target:  5'- uGgCGCCAgCAcCCGCGGcUCUGCUUCACg -3'
miRNA:   3'- -CgGUGGUaGU-GGUGCU-AGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 26008 0.75 0.528376
Target:  5'- aCCGCCGUCGCCGCGccCggcGCCCgACg -3'
miRNA:   3'- cGGUGGUAGUGGUGCuaGa--CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 26295 0.72 0.665815
Target:  5'- gGCCagGCCAggGCCACGcgCUGUCCgCGCu -3'
miRNA:   3'- -CGG--UGGUagUGGUGCuaGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 26380 0.75 0.528376
Target:  5'- cGCCGCCGUCAUCAacuUCUGCagcaccgucaCCCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUgcuAGACG----------GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 27949 0.68 0.879435
Target:  5'- cGUCGCCcgCGuCCACGAcgacgaccauaccgCUGCCCCcCa -3'
miRNA:   3'- -CGGUGGuaGU-GGUGCUa-------------GACGGGGuG- -5'
14611 3' -56.7 NC_003521.1 + 28940 0.66 0.940102
Target:  5'- gGCCACUAU-ACCACGcgCggcGCCCUc- -3'
miRNA:   3'- -CGGUGGUAgUGGUGCuaGa--CGGGGug -5'
14611 3' -56.7 NC_003521.1 + 29943 0.66 0.942789
Target:  5'- gGCCACCGagGCgACGuacacccuggGCCCUACg -3'
miRNA:   3'- -CGGUGGUagUGgUGCuaga------CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 30398 0.67 0.920135
Target:  5'- cGCUGCCGUCGCCGCccac-GCCgaCCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUGcuagaCGG--GGUG- -5'
14611 3' -56.7 NC_003521.1 + 31269 0.74 0.58666
Target:  5'- cGCCACCGUCGCCGCca----CCCCGCc -3'
miRNA:   3'- -CGGUGGUAGUGGUGcuagacGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 32880 0.66 0.948749
Target:  5'- uGgCGCCcgCGCCGcCGGUgCUGCCgCCGu -3'
miRNA:   3'- -CgGUGGuaGUGGU-GCUA-GACGG-GGUg -5'
14611 3' -56.7 NC_003521.1 + 35931 0.67 0.902812
Target:  5'- gGCCACCGUCccGCCGCGcg--GCCaauCGCg -3'
miRNA:   3'- -CGGUGGUAG--UGGUGCuagaCGGg--GUG- -5'
14611 3' -56.7 NC_003521.1 + 36090 0.68 0.8549
Target:  5'- cGCCuCCAUCACCACccUCgccacccuCCCCGCc -3'
miRNA:   3'- -CGGuGGUAGUGGUGcuAGac------GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 37082 0.67 0.902812
Target:  5'- gGgCACCAUCuCCACcucGUaCUGCCaCCGCg -3'
miRNA:   3'- -CgGUGGUAGuGGUGc--UA-GACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 40339 0.66 0.930567
Target:  5'- cGCCGCCAguuUgGCCAgGAUCacgGCgCUGCg -3'
miRNA:   3'- -CGGUGGU---AgUGGUgCUAGa--CGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 41451 0.77 0.402711
Target:  5'- cGCCGCCGUCuacACCACGGUggUGgCCCACg -3'
miRNA:   3'- -CGGUGGUAG---UGGUGCUAg-ACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 42029 0.78 0.354938
Target:  5'- cGCCGCCggCACCACGcagCUGCuaCCCACc -3'
miRNA:   3'- -CGGUGGuaGUGGUGCua-GACG--GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 42408 0.7 0.771061
Target:  5'- cGCCACCGUCACCACaacggaaGCCaCCGu -3'
miRNA:   3'- -CGGUGGUAGUGGUGcuaga--CGG-GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.