miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 58461 0.66 0.944535
Target:  5'- cGCgCACCAcgUCgACCAgGGUCUGCCaauggcCCAg -3'
miRNA:   3'- -CG-GUGGU--AG-UGGUgCUAGACGG------GGUg -5'
14611 3' -56.7 NC_003521.1 + 127236 0.66 0.935446
Target:  5'- cGCCcCCGUUGCCccCGAggccCaGCCCCACc -3'
miRNA:   3'- -CGGuGGUAGUGGu-GCUa---GaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 112843 0.66 0.948749
Target:  5'- gGCgGgCGUCAUgGcCGAgCUGCCCCAg -3'
miRNA:   3'- -CGgUgGUAGUGgU-GCUaGACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 190061 0.66 0.940102
Target:  5'- cGCCGCgCGgucuUCACgUACGuUCUGgCCCGCu -3'
miRNA:   3'- -CGGUG-GU----AGUG-GUGCuAGACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 105795 0.66 0.944535
Target:  5'- aCCACCGUgacgcagGCCACGG--UGCCCgGCa -3'
miRNA:   3'- cGGUGGUAg------UGGUGCUagACGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 77070 0.66 0.935446
Target:  5'- cGCCGCCGUgagCGCCGCug-UUGCCgCCGg -3'
miRNA:   3'- -CGGUGGUA---GUGGUGcuaGACGG-GGUg -5'
14611 3' -56.7 NC_003521.1 + 197341 0.66 0.930567
Target:  5'- gGCCGCCGcgGCCAgcacggccgcCGcgCUGgCCCGCu -3'
miRNA:   3'- -CGGUGGUagUGGU----------GCuaGACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 88068 0.66 0.930567
Target:  5'- -aCGCCGUU-CCGCGcgCUGCCCg-- -3'
miRNA:   3'- cgGUGGUAGuGGUGCuaGACGGGgug -5'
14611 3' -56.7 NC_003521.1 + 28940 0.66 0.940102
Target:  5'- gGCCACUAU-ACCACGcgCggcGCCCUc- -3'
miRNA:   3'- -CGGUGGUAgUGGUGCuaGa--CGGGGug -5'
14611 3' -56.7 NC_003521.1 + 114972 0.66 0.937335
Target:  5'- gGCCACCAaggcgcuguacgacCACCGCGA---GCCCgACg -3'
miRNA:   3'- -CGGUGGUa-------------GUGGUGCUagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 117272 0.66 0.930567
Target:  5'- aCCGCCGUCgucgGCCGuggugcCGGcuccccucacgCUGCCCCACg -3'
miRNA:   3'- cGGUGGUAG----UGGU------GCUa----------GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 214790 0.66 0.930567
Target:  5'- cGCCGCCGuccucuUCACCGCcGUCggGCgCCGg -3'
miRNA:   3'- -CGGUGGU------AGUGGUGcUAGa-CGgGGUg -5'
14611 3' -56.7 NC_003521.1 + 141608 0.66 0.935446
Target:  5'- aGCCcuAUCGUCAuCCAgGA-CUGCgCCGCg -3'
miRNA:   3'- -CGG--UGGUAGU-GGUgCUaGACGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 112648 0.66 0.930567
Target:  5'- uGCCACCcggugCugCACGA----CCCCACg -3'
miRNA:   3'- -CGGUGGua---GugGUGCUagacGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 226558 0.66 0.935446
Target:  5'- -aCGCUGUCGUCACGAUC-GCgCCGCg -3'
miRNA:   3'- cgGUGGUAGUGGUGCUAGaCGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 45643 0.66 0.948749
Target:  5'- cGCCGCCGgcuCCGCGGg--GUCCgGCg -3'
miRNA:   3'- -CGGUGGUaguGGUGCUagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 172776 0.66 0.944535
Target:  5'- uGCCACCGggggCGCCGCGGaccacgCcGCCCg-- -3'
miRNA:   3'- -CGGUGGUa---GUGGUGCUa-----GaCGGGgug -5'
14611 3' -56.7 NC_003521.1 + 163010 0.66 0.930567
Target:  5'- aGCgCGCUGcUCACCAUGAUCUGCgagaaCgGCa -3'
miRNA:   3'- -CG-GUGGU-AGUGGUGCUAGACGg----GgUG- -5'
14611 3' -56.7 NC_003521.1 + 234333 0.66 0.930567
Target:  5'- -aCACCGUCACacucuCACGAUCccacgccaUGCCCUg- -3'
miRNA:   3'- cgGUGGUAGUG-----GUGCUAG--------ACGGGGug -5'
14611 3' -56.7 NC_003521.1 + 18456 0.66 0.935446
Target:  5'- uGCCGCU-UCgACCGCGggCUGCgCgGCg -3'
miRNA:   3'- -CGGUGGuAG-UGGUGCuaGACGgGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.