miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 141608 0.66 0.935446
Target:  5'- aGCCcuAUCGUCAuCCAgGA-CUGCgCCGCg -3'
miRNA:   3'- -CGG--UGGUAGU-GGUgCUaGACGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 71385 0.66 0.930066
Target:  5'- cGCCGCCGaCGCCgucguccgcgugaGCGAggcggCgGCCCCGa -3'
miRNA:   3'- -CGGUGGUaGUGG-------------UGCUa----GaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 163010 0.66 0.930567
Target:  5'- aGCgCGCUGcUCACCAUGAUCUGCgagaaCgGCa -3'
miRNA:   3'- -CG-GUGGU-AGUGGUGCUAGACGg----GgUG- -5'
14611 3' -56.7 NC_003521.1 + 68491 0.66 0.935446
Target:  5'- cGCCGCCccucacccGUcCGCCGCGAcCgGCCUgGCg -3'
miRNA:   3'- -CGGUGG--------UA-GUGGUGCUaGaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 203385 0.66 0.940102
Target:  5'- cGCCGCgGUCGCCucaGGUCccgGCCaCGCc -3'
miRNA:   3'- -CGGUGgUAGUGGug-CUAGa--CGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 144875 0.66 0.930567
Target:  5'- cGCCuACCGcaucuUCGCCAaGAUgCUGCgggCCCACg -3'
miRNA:   3'- -CGG-UGGU-----AGUGGUgCUA-GACG---GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 132490 0.66 0.929059
Target:  5'- aCCGCCGUCGgCGCGGacgugauuuuugcuUCUGgUCUCACg -3'
miRNA:   3'- cGGUGGUAGUgGUGCU--------------AGAC-GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 143755 0.66 0.940102
Target:  5'- aCCACCGaUGCCGCG-UCUGCCacuucgacaUCACg -3'
miRNA:   3'- cGGUGGUaGUGGUGCuAGACGG---------GGUG- -5'
14611 3' -56.7 NC_003521.1 + 190061 0.66 0.940102
Target:  5'- cGCCGCgCGgucuUCACgUACGuUCUGgCCCGCu -3'
miRNA:   3'- -CGGUG-GU----AGUG-GUGCuAGACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 117272 0.66 0.930567
Target:  5'- aCCGCCGUCgucgGCCGuggugcCGGcuccccucacgCUGCCCCACg -3'
miRNA:   3'- cGGUGGUAG----UGGU------GCUa----------GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 171148 0.66 0.930066
Target:  5'- aCCACCGUCACC-CGAacacgCUGCauaguuaCCCGu -3'
miRNA:   3'- cGGUGGUAGUGGuGCUa----GACG-------GGGUg -5'
14611 3' -56.7 NC_003521.1 + 136735 0.66 0.944535
Target:  5'- cGCCGCCuu--CCGCGucCUGCCgCGCc -3'
miRNA:   3'- -CGGUGGuaguGGUGCuaGACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 135667 0.66 0.935446
Target:  5'- aGCCcCCGUCGCCugGAauuggUCUccgGCCUCu- -3'
miRNA:   3'- -CGGuGGUAGUGGugCU-----AGA---CGGGGug -5'
14611 3' -56.7 NC_003521.1 + 226558 0.66 0.935446
Target:  5'- -aCGCUGUCGUCACGAUC-GCgCCGCg -3'
miRNA:   3'- cgGUGGUAGUGGUGCUAGaCGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 214790 0.66 0.930567
Target:  5'- cGCCGCCGuccucuUCACCGCcGUCggGCgCCGg -3'
miRNA:   3'- -CGGUGGU------AGUGGUGcUAGa-CGgGGUg -5'
14611 3' -56.7 NC_003521.1 + 40339 0.66 0.930567
Target:  5'- cGCCGCCAguuUgGCCAgGAUCacgGCgCUGCg -3'
miRNA:   3'- -CGGUGGU---AgUGGUgCUAGa--CGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 105795 0.66 0.944535
Target:  5'- aCCACCGUgacgcagGCCACGG--UGCCCgGCa -3'
miRNA:   3'- cGGUGGUAg------UGGUGCUagACGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 23493 0.66 0.948749
Target:  5'- gGCCGCCGUcCGCCaccgugcugACGAUCUacagcgugGUCaCCACc -3'
miRNA:   3'- -CGGUGGUA-GUGG---------UGCUAGA--------CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 130055 0.66 0.944535
Target:  5'- gGCCACgcaCGUCuuCCGCGGcCUGCuCUCGCu -3'
miRNA:   3'- -CGGUG---GUAGu-GGUGCUaGACG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 28940 0.66 0.940102
Target:  5'- gGCCACUAU-ACCACGcgCggcGCCCUc- -3'
miRNA:   3'- -CGGUGGUAgUGGUGCuaGa--CGGGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.