Results 1 - 20 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 144875 | 0.66 | 0.930567 |
Target: 5'- cGCCuACCGcaucuUCGCCAaGAUgCUGCgggCCCACg -3' miRNA: 3'- -CGG-UGGU-----AGUGGUgCUA-GACG---GGGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 203385 | 0.66 | 0.940102 |
Target: 5'- cGCCGCgGUCGCCucaGGUCccgGCCaCGCc -3' miRNA: 3'- -CGGUGgUAGUGGug-CUAGa--CGGgGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 226558 | 0.66 | 0.935446 |
Target: 5'- -aCGCUGUCGUCACGAUC-GCgCCGCg -3' miRNA: 3'- cgGUGGUAGUGGUGCUAGaCGgGGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 68491 | 0.66 | 0.935446 |
Target: 5'- cGCCGCCccucacccGUcCGCCGCGAcCgGCCUgGCg -3' miRNA: 3'- -CGGUGG--------UA-GUGGUGCUaGaCGGGgUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 132490 | 0.66 | 0.929059 |
Target: 5'- aCCGCCGUCGgCGCGGacgugauuuuugcuUCUGgUCUCACg -3' miRNA: 3'- cGGUGGUAGUgGUGCU--------------AGAC-GGGGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 171148 | 0.66 | 0.930066 |
Target: 5'- aCCACCGUCACC-CGAacacgCUGCauaguuaCCCGu -3' miRNA: 3'- cGGUGGUAGUGGuGCUa----GACG-------GGGUg -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 28940 | 0.66 | 0.940102 |
Target: 5'- gGCCACUAU-ACCACGcgCggcGCCCUc- -3' miRNA: 3'- -CGGUGGUAgUGGUGCuaGa--CGGGGug -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 135667 | 0.66 | 0.935446 |
Target: 5'- aGCCcCCGUCGCCugGAauuggUCUccgGCCUCu- -3' miRNA: 3'- -CGGuGGUAGUGGugCU-----AGA---CGGGGug -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 141608 | 0.66 | 0.935446 |
Target: 5'- aGCCcuAUCGUCAuCCAgGA-CUGCgCCGCg -3' miRNA: 3'- -CGG--UGGUAGU-GGUgCUaGACGgGGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 214790 | 0.66 | 0.930567 |
Target: 5'- cGCCGCCGuccucuUCACCGCcGUCggGCgCCGg -3' miRNA: 3'- -CGGUGGU------AGUGGUGcUAGa-CGgGGUg -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 163010 | 0.66 | 0.930567 |
Target: 5'- aGCgCGCUGcUCACCAUGAUCUGCgagaaCgGCa -3' miRNA: 3'- -CG-GUGGU-AGUGGUGCUAGACGg----GgUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 71385 | 0.66 | 0.930066 |
Target: 5'- cGCCGCCGaCGCCgucguccgcgugaGCGAggcggCgGCCCCGa -3' miRNA: 3'- -CGGUGGUaGUGG-------------UGCUa----GaCGGGGUg -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 130055 | 0.66 | 0.944535 |
Target: 5'- gGCCACgcaCGUCuuCCGCGGcCUGCuCUCGCu -3' miRNA: 3'- -CGGUG---GUAGu-GGUGCUaGACG-GGGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 58461 | 0.66 | 0.944535 |
Target: 5'- cGCgCACCAcgUCgACCAgGGUCUGCCaauggcCCAg -3' miRNA: 3'- -CG-GUGGU--AG-UGGUgCUAGACGG------GGUg -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 136735 | 0.66 | 0.944535 |
Target: 5'- cGCCGCCuu--CCGCGucCUGCCgCGCc -3' miRNA: 3'- -CGGUGGuaguGGUGCuaGACGGgGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 23493 | 0.66 | 0.948749 |
Target: 5'- gGCCGCCGUcCGCCaccgugcugACGAUCUacagcgugGUCaCCACc -3' miRNA: 3'- -CGGUGGUA-GUGG---------UGCUAGA--------CGG-GGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 105795 | 0.66 | 0.944535 |
Target: 5'- aCCACCGUgacgcagGCCACGG--UGCCCgGCa -3' miRNA: 3'- cGGUGGUAg------UGGUGCUagACGGGgUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 40339 | 0.66 | 0.930567 |
Target: 5'- cGCCGCCAguuUgGCCAgGAUCacgGCgCUGCg -3' miRNA: 3'- -CGGUGGU---AgUGGUgCUAGa--CGgGGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 117272 | 0.66 | 0.930567 |
Target: 5'- aCCGCCGUCgucgGCCGuggugcCGGcuccccucacgCUGCCCCACg -3' miRNA: 3'- cGGUGGUAG----UGGU------GCUa----------GACGGGGUG- -5' |
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14611 | 3' | -56.7 | NC_003521.1 | + | 143755 | 0.66 | 0.940102 |
Target: 5'- aCCACCGaUGCCGCG-UCUGCCacuucgacaUCACg -3' miRNA: 3'- cGGUGGUaGUGGUGCuAGACGG---------GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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