miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 220880 0.92 0.054968
Target:  5'- gGCCACCAUCACCACGAUCUcGCCCa-- -3'
miRNA:   3'- -CGGUGGUAGUGGUGCUAGA-CGGGgug -5'
14611 3' -56.7 NC_003521.1 + 222088 0.83 0.181804
Target:  5'- cGCCACCGcCGCCACGAUC-GCCgCCGCc -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUAGaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 42029 0.78 0.354938
Target:  5'- cGCCGCCggCACCACGcagCUGCuaCCCACc -3'
miRNA:   3'- -CGGUGGuaGUGGUGCua-GACG--GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 217507 0.77 0.386338
Target:  5'- gGCCugCAUgGCCACGGUgCUGUagaCCCGCg -3'
miRNA:   3'- -CGGugGUAgUGGUGCUA-GACG---GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 41451 0.77 0.402711
Target:  5'- cGCCGCCGUCuacACCACGGUggUGgCCCACg -3'
miRNA:   3'- -CGGUGGUAG---UGGUGCUAg-ACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 223821 0.77 0.411061
Target:  5'- cGCCGCCGcCACCGCGGgcgccugCUGUCCCuGCg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUa------GACGGGG-UG- -5'
14611 3' -56.7 NC_003521.1 + 45429 0.77 0.386339
Target:  5'- cCCGCCGUCGgCGCGGUCaugGCCUCGCc -3'
miRNA:   3'- cGGUGGUAGUgGUGCUAGa--CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 49749 0.76 0.472368
Target:  5'- cGCCGCCGcCACCACGGUC-GCCgCGg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUAGaCGGgGUg -5'
14611 3' -56.7 NC_003521.1 + 129761 0.76 0.445505
Target:  5'- cGCCGCCcUCuACCGCGc-CUGUCCCGCg -3'
miRNA:   3'- -CGGUGGuAG-UGGUGCuaGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 146416 0.76 0.472368
Target:  5'- gGCCGCCgcGUCaaccugcgcgGCUACGAUaacaUGCCCCACa -3'
miRNA:   3'- -CGGUGG--UAG----------UGGUGCUAg---ACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 118222 0.76 0.463321
Target:  5'- cGCCGCCGUCGCCGgggUGGUCaaUGCCUCGu -3'
miRNA:   3'- -CGGUGGUAGUGGU---GCUAG--ACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 17499 0.75 0.500025
Target:  5'- cGCCGCCgGUCACgGCGGUUcccgGCCCgGCg -3'
miRNA:   3'- -CGGUGG-UAGUGgUGCUAGa---CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 26008 0.75 0.528376
Target:  5'- aCCGCCGUCGCCGCGccCggcGCCCgACg -3'
miRNA:   3'- cGGUGGUAGUGGUGCuaGa--CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 23602 0.75 0.518855
Target:  5'- gGCCugCAUCcucuUCGCGAUCUGCaCCGCc -3'
miRNA:   3'- -CGGugGUAGu---GGUGCUAGACGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 48774 0.75 0.490724
Target:  5'- cGCCGCgGaCGCCGCG-UCUGCCgCGCa -3'
miRNA:   3'- -CGGUGgUaGUGGUGCuAGACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 26380 0.75 0.528376
Target:  5'- cGCCGCCGUCAUCAacuUCUGCagcaccgucaCCCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUgcuAGACG----------GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 215149 0.75 0.522655
Target:  5'- gGCCAgCGUCACCaggacguggaccagcACGAUCUGCCgCCu- -3'
miRNA:   3'- -CGGUgGUAGUGG---------------UGCUAGACGG-GGug -5'
14611 3' -56.7 NC_003521.1 + 209200 0.75 0.500025
Target:  5'- cCCACCGUCgGCCGCGGUg-GCCCUGCc -3'
miRNA:   3'- cGGUGGUAG-UGGUGCUAgaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 233188 0.75 0.509404
Target:  5'- gGCCGCCGUUACCGuCGGUCguuCCCgACa -3'
miRNA:   3'- -CGGUGGUAGUGGU-GCUAGac-GGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 75678 0.74 0.576834
Target:  5'- aCCACCAUCacgccggcACCGCGGUCcaGCCCC-Cg -3'
miRNA:   3'- cGGUGGUAG--------UGGUGCUAGa-CGGGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.