miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 152459 0.72 0.675673
Target:  5'- uGCUAUCGUCauaggcggcgGCCACGAUCU-CCCCGa -3'
miRNA:   3'- -CGGUGGUAG----------UGGUGCUAGAcGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 62837 0.74 0.53796
Target:  5'- cGCCcuACCcgCACCGCcccaGGUgUGCCCCGCc -3'
miRNA:   3'- -CGG--UGGuaGUGGUG----CUAgACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 75678 0.74 0.576834
Target:  5'- aCCACCAUCacgccggcACCGCGGUCcaGCCCC-Cg -3'
miRNA:   3'- cGGUGGUAG--------UGGUGCUAGa-CGGGGuG- -5'
14611 3' -56.7 NC_003521.1 + 220167 0.73 0.616295
Target:  5'- cGCCACgGUCAUCACGuag-GCgCCCACc -3'
miRNA:   3'- -CGGUGgUAGUGGUGCuagaCG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 3647 0.73 0.626205
Target:  5'- uGCCACgGcCGCCGCcGUCUGCCUCGg -3'
miRNA:   3'- -CGGUGgUaGUGGUGcUAGACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 224117 0.73 0.626205
Target:  5'- cGCCGCgCAUCACgCGCG-UCUGCCaCAUg -3'
miRNA:   3'- -CGGUG-GUAGUG-GUGCuAGACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 79564 0.73 0.63612
Target:  5'- uGCCGCCGUCGCUGCucuGAUCcugGCCgCUACu -3'
miRNA:   3'- -CGGUGGUAGUGGUG---CUAGa--CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 76612 0.72 0.655932
Target:  5'- aGCCGCCGcUACCACcg-CcGCCCCGCc -3'
miRNA:   3'- -CGGUGGUaGUGGUGcuaGaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 26295 0.72 0.665815
Target:  5'- gGCCagGCCAggGCCACGcgCUGUCCgCGCu -3'
miRNA:   3'- -CGG--UGGUagUGGUGCuaGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 215149 0.75 0.522655
Target:  5'- gGCCAgCGUCACCaggacguggaccagcACGAUCUGCCgCCu- -3'
miRNA:   3'- -CGGUgGUAGUGG---------------UGCUAGACGG-GGug -5'
14611 3' -56.7 NC_003521.1 + 233188 0.75 0.509404
Target:  5'- gGCCGCCGUUACCGuCGGUCguuCCCgACa -3'
miRNA:   3'- -CGGUGGUAGUGGU-GCUAGac-GGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 209200 0.75 0.500025
Target:  5'- cCCACCGUCgGCCGCGGUg-GCCCUGCc -3'
miRNA:   3'- cGGUGGUAG-UGGUGCUAgaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 42029 0.78 0.354938
Target:  5'- cGCCGCCggCACCACGcagCUGCuaCCCACc -3'
miRNA:   3'- -CGGUGGuaGUGGUGCua-GACG--GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 217507 0.77 0.386338
Target:  5'- gGCCugCAUgGCCACGGUgCUGUagaCCCGCg -3'
miRNA:   3'- -CGGugGUAgUGGUGCUA-GACG---GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 41451 0.77 0.402711
Target:  5'- cGCCGCCGUCuacACCACGGUggUGgCCCACg -3'
miRNA:   3'- -CGGUGGUAG---UGGUGCUAg-ACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 223821 0.77 0.411061
Target:  5'- cGCCGCCGcCACCGCGGgcgccugCUGUCCCuGCg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUa------GACGGGG-UG- -5'
14611 3' -56.7 NC_003521.1 + 129761 0.76 0.445505
Target:  5'- cGCCGCCcUCuACCGCGc-CUGUCCCGCg -3'
miRNA:   3'- -CGGUGGuAG-UGGUGCuaGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 118222 0.76 0.463321
Target:  5'- cGCCGCCGUCGCCGgggUGGUCaaUGCCUCGu -3'
miRNA:   3'- -CGGUGGUAGUGGU---GCUAG--ACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 146416 0.76 0.472368
Target:  5'- gGCCGCCgcGUCaaccugcgcgGCUACGAUaacaUGCCCCACa -3'
miRNA:   3'- -CGGUGG--UAG----------UGGUGCUAg---ACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 17499 0.75 0.500025
Target:  5'- cGCCGCCgGUCACgGCGGUUcccgGCCCgGCg -3'
miRNA:   3'- -CGGUGG-UAGUGgUGCUAGa---CGGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.