miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 222088 0.83 0.181804
Target:  5'- cGCCACCGcCGCCACGAUC-GCCgCCGCc -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUAGaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 163111 0.73 0.646031
Target:  5'- gGCCGCCGUCGCCAacaac-GCCgCCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUgcuagaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 113446 0.72 0.655932
Target:  5'- gGCCGCCcuUCAUCACGcacCUGCCgCGCa -3'
miRNA:   3'- -CGGUGGu-AGUGGUGCua-GACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 23493 0.66 0.948749
Target:  5'- gGCCGCCGUcCGCCaccgugcugACGAUCUacagcgugGUCaCCACc -3'
miRNA:   3'- -CGGUGGUA-GUGG---------UGCUAGA--------CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 23602 0.75 0.518855
Target:  5'- gGCCugCAUCcucuUCGCGAUCUGCaCCGCc -3'
miRNA:   3'- -CGGugGUAGu---GGUGCUAGACGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 26008 0.75 0.528376
Target:  5'- aCCGCCGUCGCCGCGccCggcGCCCgACg -3'
miRNA:   3'- cGGUGGUAGUGGUGCuaGa--CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 188540 0.74 0.53796
Target:  5'- cGUCGCCAUCACCAUGAacgCcGCUCCGg -3'
miRNA:   3'- -CGGUGGUAGUGGUGCUa--GaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 109734 0.74 0.544704
Target:  5'- cCCGCCGUCcggagcccgcgcgaGCCGCGGUCgccGCCaCCGCg -3'
miRNA:   3'- cGGUGGUAG--------------UGGUGCUAGa--CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 92412 0.73 0.626205
Target:  5'- gGCCGCCcgCACCAUGG-CUcCCUCGCa -3'
miRNA:   3'- -CGGUGGuaGUGGUGCUaGAcGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 191715 0.73 0.643058
Target:  5'- cGCCGCgGUCACCACGcgcacuuuguggauAUC-GCCCCcCg -3'
miRNA:   3'- -CGGUGgUAGUGGUGC--------------UAGaCGGGGuG- -5'
14611 3' -56.7 NC_003521.1 + 161200 0.73 0.626205
Target:  5'- -aCGCCGaggCGCCGCGGUC-GCCCCGg -3'
miRNA:   3'- cgGUGGUa--GUGGUGCUAGaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 19791 0.73 0.606397
Target:  5'- cGCCAUgAUCGCCACGGUggugCUGUUCUGCu -3'
miRNA:   3'- -CGGUGgUAGUGGUGCUA----GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 45429 0.77 0.386339
Target:  5'- cCCGCCGUCGgCGCGGUCaugGCCUCGCc -3'
miRNA:   3'- cGGUGGUAGUgGUGCUAGa--CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 165043 0.73 0.63612
Target:  5'- uGCCGCgGcgucugCACCugGAggcggccuuUCUGCCCUACa -3'
miRNA:   3'- -CGGUGgUa-----GUGGugCU---------AGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 49749 0.76 0.472368
Target:  5'- cGCCGCCGcCACCACGGUC-GCCgCGg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUAGaCGGgGUg -5'
14611 3' -56.7 NC_003521.1 + 31269 0.74 0.58666
Target:  5'- cGCCACCGUCGCCGCca----CCCCGCc -3'
miRNA:   3'- -CGGUGGUAGUGGUGcuagacGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 17656 0.73 0.63612
Target:  5'- cGCCagcACCGgggCACCACGGUg-GCCCUGCg -3'
miRNA:   3'- -CGG---UGGUa--GUGGUGCUAgaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 59149 0.72 0.655932
Target:  5'- aGCUGCCGUCucuCUcCGAUCUcCCCCGCg -3'
miRNA:   3'- -CGGUGGUAGu--GGuGCUAGAcGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 48774 0.75 0.490724
Target:  5'- cGCCGCgGaCGCCGCG-UCUGCCgCGCa -3'
miRNA:   3'- -CGGUGgUaGUGGUGCuAGACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 26380 0.75 0.528376
Target:  5'- cGCCGCCGUCAUCAacuUCUGCagcaccgucaCCCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUgcuAGACG----------GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.