Results 1 - 20 of 274 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 17656 | 0.73 | 0.63612 |
Target: 5'- cGCCagcACCGgggCACCACGGUg-GCCCUGCg -3' miRNA: 3'- -CGG---UGGUa--GUGGUGCUAgaCGGGGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 222088 | 0.83 | 0.181804 |
Target: 5'- cGCCACCGcCGCCACGAUC-GCCgCCGCc -3' miRNA: 3'- -CGGUGGUaGUGGUGCUAGaCGG-GGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 45429 | 0.77 | 0.386339 |
Target: 5'- cCCGCCGUCGgCGCGGUCaugGCCUCGCc -3' miRNA: 3'- cGGUGGUAGUgGUGCUAGa--CGGGGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 31269 | 0.74 | 0.58666 |
Target: 5'- cGCCACCGUCGCCGCca----CCCCGCc -3' miRNA: 3'- -CGGUGGUAGUGGUGcuagacGGGGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 19791 | 0.73 | 0.606397 |
Target: 5'- cGCCAUgAUCGCCACGGUggugCUGUUCUGCu -3' miRNA: 3'- -CGGUGgUAGUGGUGCUA----GACGGGGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 49749 | 0.76 | 0.472368 |
Target: 5'- cGCCGCCGcCACCACGGUC-GCCgCGg -3' miRNA: 3'- -CGGUGGUaGUGGUGCUAGaCGGgGUg -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 26380 | 0.75 | 0.528376 |
Target: 5'- cGCCGCCGUCAUCAacuUCUGCagcaccgucaCCCACg -3' miRNA: 3'- -CGGUGGUAGUGGUgcuAGACG----------GGGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 109734 | 0.74 | 0.544704 |
Target: 5'- cCCGCCGUCcggagcccgcgcgaGCCGCGGUCgccGCCaCCGCg -3' miRNA: 3'- cGGUGGUAG--------------UGGUGCUAGa--CGG-GGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 165043 | 0.73 | 0.63612 |
Target: 5'- uGCCGCgGcgucugCACCugGAggcggccuuUCUGCCCUACa -3' miRNA: 3'- -CGGUGgUa-----GUGGugCU---------AGACGGGGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 59149 | 0.72 | 0.655932 |
Target: 5'- aGCUGCCGUCucuCUcCGAUCUcCCCCGCg -3' miRNA: 3'- -CGGUGGUAGu--GGuGCUAGAcGGGGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 23493 | 0.66 | 0.948749 |
Target: 5'- gGCCGCCGUcCGCCaccgugcugACGAUCUacagcgugGUCaCCACc -3' miRNA: 3'- -CGGUGGUA-GUGG---------UGCUAGA--------CGG-GGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 23602 | 0.75 | 0.518855 |
Target: 5'- gGCCugCAUCcucuUCGCGAUCUGCaCCGCc -3' miRNA: 3'- -CGGugGUAGu---GGUGCUAGACGgGGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 48774 | 0.75 | 0.490724 |
Target: 5'- cGCCGCgGaCGCCGCG-UCUGCCgCGCa -3' miRNA: 3'- -CGGUGgUaGUGGUGCuAGACGGgGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 185891 | 0.73 | 0.626205 |
Target: 5'- aCCACCGUCACUuu--UCUGCCCaCGCc -3' miRNA: 3'- cGGUGGUAGUGGugcuAGACGGG-GUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 161200 | 0.73 | 0.626205 |
Target: 5'- -aCGCCGaggCGCCGCGGUC-GCCCCGg -3' miRNA: 3'- cgGUGGUa--GUGGUGCUAGaCGGGGUg -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 26008 | 0.75 | 0.528376 |
Target: 5'- aCCGCCGUCGCCGCGccCggcGCCCgACg -3' miRNA: 3'- cGGUGGUAGUGGUGCuaGa--CGGGgUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 163111 | 0.73 | 0.646031 |
Target: 5'- gGCCGCCGUCGCCAacaac-GCCgCCACg -3' miRNA: 3'- -CGGUGGUAGUGGUgcuagaCGG-GGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 113446 | 0.72 | 0.655932 |
Target: 5'- gGCCGCCcuUCAUCACGcacCUGCCgCGCa -3' miRNA: 3'- -CGGUGGu-AGUGGUGCua-GACGGgGUG- -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 188540 | 0.74 | 0.53796 |
Target: 5'- cGUCGCCAUCACCAUGAacgCcGCUCCGg -3' miRNA: 3'- -CGGUGGUAGUGGUGCUa--GaCGGGGUg -5' |
|||||||
14611 | 3' | -56.7 | NC_003521.1 | + | 92412 | 0.73 | 0.626205 |
Target: 5'- gGCCGCCcgCACCAUGG-CUcCCUCGCa -3' miRNA: 3'- -CGGUGGuaGUGGUGCUaGAcGGGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home