miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 1111 0.67 0.900353
Target:  5'- gGCCACCAUCGuCCACGAggcgGCgacgggacacgaaCCGCu -3'
miRNA:   3'- -CGGUGGUAGU-GGUGCUaga-CGg------------GGUG- -5'
14611 3' -56.7 NC_003521.1 + 1653 0.68 0.869611
Target:  5'- uGCUGCCcaGUCGCUggcuaACGAUCuacUGCCgCCACg -3'
miRNA:   3'- -CGGUGG--UAGUGG-----UGCUAG---ACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 3647 0.73 0.626205
Target:  5'- uGCCACgGcCGCCGCcGUCUGCCUCGg -3'
miRNA:   3'- -CGGUGgUaGUGGUGcUAGACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 4346 0.67 0.896597
Target:  5'- cGCCACCGcCGCCgGCGGUUcGCucaucgcggCCCGCg -3'
miRNA:   3'- -CGGUGGUaGUGG-UGCUAGaCG---------GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 8619 0.68 0.876669
Target:  5'- aGCCACCAcCAcCCGCGGg--GgCCCAUg -3'
miRNA:   3'- -CGGUGGUaGU-GGUGCUagaCgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 12089 0.69 0.839432
Target:  5'- cGCCGCUGcUCACCACGca--GCCCgACa -3'
miRNA:   3'- -CGGUGGU-AGUGGUGCuagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 12647 0.68 0.8549
Target:  5'- uCCAgCGUCACCACGAaCaGCgCUACa -3'
miRNA:   3'- cGGUgGUAGUGGUGCUaGaCGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 13880 0.7 0.797791
Target:  5'- cGCCGCCAuggauuUCGCCGgGGg--GCCCgGCg -3'
miRNA:   3'- -CGGUGGU------AGUGGUgCUagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 13937 0.67 0.920135
Target:  5'- gGCCGCCGUgGugcccCCGCag-CUGCCCuCGCu -3'
miRNA:   3'- -CGGUGGUAgU-----GGUGcuaGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 16021 0.67 0.908809
Target:  5'- cGCC-CUA-CGCCACGcgC-GUCCCGCa -3'
miRNA:   3'- -CGGuGGUaGUGGUGCuaGaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 17499 0.75 0.500025
Target:  5'- cGCCGCCgGUCACgGCGGUUcccgGCCCgGCg -3'
miRNA:   3'- -CGGUGG-UAGUGgUGCUAGa---CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 17656 0.73 0.63612
Target:  5'- cGCCagcACCGgggCACCACGGUg-GCCCUGCg -3'
miRNA:   3'- -CGG---UGGUa--GUGGUGCUAgaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 17724 0.69 0.828995
Target:  5'- gGCCGCCAUC-CCGCaGAUCUacgcacguucgcugGCCuCCGa -3'
miRNA:   3'- -CGGUGGUAGuGGUG-CUAGA--------------CGG-GGUg -5'
14611 3' -56.7 NC_003521.1 + 18456 0.66 0.935446
Target:  5'- uGCCGCU-UCgACCGCGggCUGCgCgGCg -3'
miRNA:   3'- -CGGUGGuAG-UGGUGCuaGACGgGgUG- -5'
14611 3' -56.7 NC_003521.1 + 18928 0.67 0.902813
Target:  5'- cGCCGCg--CGCCgGCaAUCcGCCCCACa -3'
miRNA:   3'- -CGGUGguaGUGG-UGcUAGaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 19791 0.73 0.606397
Target:  5'- cGCCAUgAUCGCCACGGUggugCUGUUCUGCu -3'
miRNA:   3'- -CGGUGgUAGUGGUGCUA----GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 21630 0.69 0.823257
Target:  5'- aCCGCCAUCauggGCCugGggCUcaGCCgCCACu -3'
miRNA:   3'- cGGUGGUAG----UGGugCuaGA--CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 22124 0.68 0.883522
Target:  5'- cGCCGCCGUCuccuCCGCcuUC-GCCgCCGCc -3'
miRNA:   3'- -CGGUGGUAGu---GGUGcuAGaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 22504 0.66 0.948749
Target:  5'- aCCACCGUgGCCACGGguuUCUGCg---- -3'
miRNA:   3'- cGGUGGUAgUGGUGCU---AGACGgggug -5'
14611 3' -56.7 NC_003521.1 + 23427 0.7 0.761907
Target:  5'- uGCCGCCGcUCAgccuggcggugcCCACGGUgUGCCUgGCc -3'
miRNA:   3'- -CGGUGGU-AGU------------GGUGCUAgACGGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.