miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 240503 0.69 0.846483
Target:  5'- cCCGCUGUCACCACcaaGUCucauccggaaacuUGCCCUACc -3'
miRNA:   3'- cGGUGGUAGUGGUGc--UAG-------------ACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 236365 0.67 0.896597
Target:  5'- cGCCcagACCGUCAgCCGC-AUC-GCUCCGCa -3'
miRNA:   3'- -CGG---UGGUAGU-GGUGcUAGaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 235490 0.7 0.788125
Target:  5'- aCCACUAUCGCCggagucgcggccgGCGGggcacgCcGCCCCGCg -3'
miRNA:   3'- cGGUGGUAGUGG-------------UGCUa-----GaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 235301 0.66 0.940102
Target:  5'- gGCUGCCGUCACCGuCGcugCUGCuacuCCUGCc -3'
miRNA:   3'- -CGGUGGUAGUGGU-GCua-GACG----GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 234333 0.66 0.930567
Target:  5'- -aCACCGUCACacucuCACGAUCccacgccaUGCCCUg- -3'
miRNA:   3'- cgGUGGUAGUG-----GUGCUAG--------ACGGGGug -5'
14611 3' -56.7 NC_003521.1 + 234328 0.67 0.908808
Target:  5'- aGCCucuGCCGUCACCGCcuccgcugccgGAcCUGCCUCcCg -3'
miRNA:   3'- -CGG---UGGUAGUGGUG-----------CUaGACGGGGuG- -5'
14611 3' -56.7 NC_003521.1 + 234238 0.66 0.948749
Target:  5'- cGCC-CCAUCACUcUGAUCccuuuaCCCUACg -3'
miRNA:   3'- -CGGuGGUAGUGGuGCUAGac----GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 233188 0.75 0.509404
Target:  5'- gGCCGCCGUUACCGuCGGUCguuCCCgACa -3'
miRNA:   3'- -CGGUGGUAGUGGU-GCUAGac-GGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 233095 0.68 0.890166
Target:  5'- cGCCGCUcgCGCCGCc--CU-CCCCACc -3'
miRNA:   3'- -CGGUGGuaGUGGUGcuaGAcGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 232387 0.66 0.944535
Target:  5'- uCCACCGUC-UCGCGcuggCUGCgCCUGCg -3'
miRNA:   3'- cGGUGGUAGuGGUGCua--GACG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 231147 0.67 0.894051
Target:  5'- uUUACCAUCACUugGAggcgacagauccgCUGCUCCGg -3'
miRNA:   3'- cGGUGGUAGUGGugCUa------------GACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 227916 0.68 0.869611
Target:  5'- cGCCACCAgCGCCAgGcuGUCUGUgguaguCCCAg -3'
miRNA:   3'- -CGGUGGUaGUGGUgC--UAGACG------GGGUg -5'
14611 3' -56.7 NC_003521.1 + 226558 0.66 0.935446
Target:  5'- -aCGCUGUCGUCACGAUC-GCgCCGCg -3'
miRNA:   3'- cgGUGGUAGUGGUGCUAGaCGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 224991 0.7 0.780098
Target:  5'- cCCACCAgCACCACGcacUUGCCCagCACg -3'
miRNA:   3'- cGGUGGUaGUGGUGCua-GACGGG--GUG- -5'
14611 3' -56.7 NC_003521.1 + 224234 0.67 0.908809
Target:  5'- aCCACCAUCcuccguccuCCcCGGUC-GCCUCGCa -3'
miRNA:   3'- cGGUGGUAGu--------GGuGCUAGaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 224117 0.73 0.626205
Target:  5'- cGCCGCgCAUCACgCGCG-UCUGCCaCAUg -3'
miRNA:   3'- -CGGUG-GUAGUG-GUGCuAGACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 223821 0.77 0.411061
Target:  5'- cGCCGCCGcCACCGCGGgcgccugCUGUCCCuGCg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUa------GACGGGG-UG- -5'
14611 3' -56.7 NC_003521.1 + 223657 0.67 0.914583
Target:  5'- aGCUGCCAgCGCUGCGccUCgGCCUCGCg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCu-AGaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 222963 0.67 0.919043
Target:  5'- cCCAUCAUCAgCACGcagggcaccucCUGCgCCCACu -3'
miRNA:   3'- cGGUGGUAGUgGUGCua---------GACG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 222165 0.72 0.675673
Target:  5'- cGCCcCCGUgGCCAgcaGGUCcgugcgGCCCCACg -3'
miRNA:   3'- -CGGuGGUAgUGGUg--CUAGa-----CGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.