miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 222088 0.83 0.181804
Target:  5'- cGCCACCGcCGCCACGAUC-GCCgCCGCc -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUAGaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 221275 0.7 0.79779
Target:  5'- aGCCGCaCAcgcUCAUCAgGAucaggcUCUGCaCCCACa -3'
miRNA:   3'- -CGGUG-GU---AGUGGUgCU------AGACG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 220880 0.92 0.054968
Target:  5'- gGCCACCAUCACCACGAUCUcGCCCa-- -3'
miRNA:   3'- -CGGUGGUAGUGGUGCUAGA-CGGGgug -5'
14611 3' -56.7 NC_003521.1 + 220840 0.68 0.883522
Target:  5'- cGCCGCCA--GCCACGAacaCaGUCCCAa -3'
miRNA:   3'- -CGGUGGUagUGGUGCUa--GaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 220167 0.73 0.616295
Target:  5'- cGCCACgGUCAUCACGuag-GCgCCCACc -3'
miRNA:   3'- -CGGUGgUAGUGGUGCuagaCG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 218620 0.67 0.908808
Target:  5'- gGCCGCCAgcgCGCgGCGGUaaGCggCCACg -3'
miRNA:   3'- -CGGUGGUa--GUGgUGCUAgaCGg-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 217831 0.68 0.862353
Target:  5'- uGCCGCUAUCACCgucaaccagGCGcagaGCCCCAg -3'
miRNA:   3'- -CGGUGGUAGUGG---------UGCuagaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 217507 0.77 0.386338
Target:  5'- gGCCugCAUgGCCACGGUgCUGUagaCCCGCg -3'
miRNA:   3'- -CGGugGUAgUGGUGCUA-GACG---GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 216646 0.67 0.914583
Target:  5'- uGCCGCCcggcuUCGCUccuuucCGAg-UGCCCCGCg -3'
miRNA:   3'- -CGGUGGu----AGUGGu-----GCUagACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 215149 0.75 0.522655
Target:  5'- gGCCAgCGUCACCaggacguggaccagcACGAUCUGCCgCCu- -3'
miRNA:   3'- -CGGUgGUAGUGG---------------UGCUAGACGG-GGug -5'
14611 3' -56.7 NC_003521.1 + 214790 0.66 0.930567
Target:  5'- cGCCGCCGuccucuUCACCGCcGUCggGCgCCGg -3'
miRNA:   3'- -CGGUGGU------AGUGGUGcUAGa-CGgGGUg -5'
14611 3' -56.7 NC_003521.1 + 214294 0.67 0.914583
Target:  5'- gGCCAggaugcCCAUCACCACGGUgaGCa--GCg -3'
miRNA:   3'- -CGGU------GGUAGUGGUGCUAgaCGgggUG- -5'
14611 3' -56.7 NC_003521.1 + 212848 0.68 0.8549
Target:  5'- uGCCGCCGUgGCCGUGAgcgCcGCCUgGCg -3'
miRNA:   3'- -CGGUGGUAgUGGUGCUa--GaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 212684 0.71 0.713724
Target:  5'- cGCCGCCGUCGCCAgGGcaaggcuggugggUCggGCCUCGa -3'
miRNA:   3'- -CGGUGGUAGUGGUgCU-------------AGa-CGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 212112 0.71 0.714689
Target:  5'- cGCCACCAUCugGCgCACGGUCgGaCUCUGCa -3'
miRNA:   3'- -CGGUGGUAG--UG-GUGCUAGaC-GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 210233 0.68 0.862353
Target:  5'- -gCACCGUCagcgcggacggcACUugGAcCUGCCCUACc -3'
miRNA:   3'- cgGUGGUAG------------UGGugCUaGACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 209804 0.66 0.940102
Target:  5'- aCCACCAcgaacgcguccUCGCCgGCGccGUCgucGCCCCAUc -3'
miRNA:   3'- cGGUGGU-----------AGUGG-UGC--UAGa--CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 209529 0.68 0.862352
Target:  5'- cGUCGCCGcUGCCGCGGUUaugcGCCCgGCg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUAGa---CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 209200 0.75 0.500025
Target:  5'- cCCACCGUCgGCCGCGGUg-GCCCUGCc -3'
miRNA:   3'- cGGUGGUAG-UGGUGCUAgaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 205872 0.68 0.869611
Target:  5'- gGCCgACCucugcgugCGCCGCGAcuacgagggUCUGCgCCGCu -3'
miRNA:   3'- -CGG-UGGua------GUGGUGCU---------AGACGgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.