miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 222088 0.83 0.181804
Target:  5'- cGCCACCGcCGCCACGAUC-GCCgCCGCc -3'
miRNA:   3'- -CGGUGGUaGUGGUGCUAGaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 171421 0.7 0.761907
Target:  5'- cGUCACCGUC-CCGCG-UCUGCugcguCUCACg -3'
miRNA:   3'- -CGGUGGUAGuGGUGCuAGACG-----GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 181207 0.71 0.752646
Target:  5'- aGCCGCgGUCGCCGcCGGggCcGCCgCCACu -3'
miRNA:   3'- -CGGUGgUAGUGGU-GCUa-GaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 193255 0.72 0.685497
Target:  5'- cGCCACCGUgGCCcgcuCGccGUCUuCCCCGCu -3'
miRNA:   3'- -CGGUGGUAgUGGu---GC--UAGAcGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 185891 0.73 0.626205
Target:  5'- aCCACCGUCACUuu--UCUGCCCaCGCc -3'
miRNA:   3'- cGGUGGUAGUGGugcuAGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 107298 0.7 0.780098
Target:  5'- gGCCGucgaaaaucuCCGaaUCGCCGCGGguuggGCCCCGCa -3'
miRNA:   3'- -CGGU----------GGU--AGUGGUGCUaga--CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 119514 0.7 0.768327
Target:  5'- uUCACC-UC-CCACGAacacuucggccucaUCUGCCCCAa -3'
miRNA:   3'- cGGUGGuAGuGGUGCU--------------AGACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 109734 0.74 0.544704
Target:  5'- cCCGCCGUCcggagcccgcgcgaGCCGCGGUCgccGCCaCCGCg -3'
miRNA:   3'- cGGUGGUAG--------------UGGUGCUAGa--CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 148811 0.71 0.705014
Target:  5'- cGCCGCCGcCGCCGCGccUCgccGCuCCCGCu -3'
miRNA:   3'- -CGGUGGUaGUGGUGCu-AGa--CG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 49454 0.71 0.705014
Target:  5'- -aCGCCGUCugCGCGcuUCUGCUCaCACu -3'
miRNA:   3'- cgGUGGUAGugGUGCu-AGACGGG-GUG- -5'
14611 3' -56.7 NC_003521.1 + 26380 0.75 0.528376
Target:  5'- cGCCGCCGUCAUCAacuUCUGCagcaccgucaCCCACg -3'
miRNA:   3'- -CGGUGGUAGUGGUgcuAGACG----------GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 26008 0.75 0.528376
Target:  5'- aCCGCCGUCGCCGCGccCggcGCCCgACg -3'
miRNA:   3'- cGGUGGUAGUGGUGCuaGa--CGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 13880 0.7 0.797791
Target:  5'- cGCCGCCAuggauuUCGCCGgGGg--GCCCgGCg -3'
miRNA:   3'- -CGGUGGU------AGUGGUgCUagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 158069 0.7 0.780098
Target:  5'- cCCGCCgGUCGCgCGUGAUCUcGUCCCGCa -3'
miRNA:   3'- cGGUGG-UAGUG-GUGCUAGA-CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 95238 0.71 0.714689
Target:  5'- gGCCACgGcCGCCGCG-UCgUGCCgCCGCa -3'
miRNA:   3'- -CGGUGgUaGUGGUGCuAG-ACGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 17656 0.73 0.63612
Target:  5'- cGCCagcACCGgggCACCACGGUg-GCCCUGCg -3'
miRNA:   3'- -CGG---UGGUa--GUGGUGCUAgaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 161200 0.73 0.626205
Target:  5'- -aCGCCGaggCGCCGCGGUC-GCCCCGg -3'
miRNA:   3'- cgGUGGUa--GUGGUGCUAGaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 23602 0.75 0.518855
Target:  5'- gGCCugCAUCcucuUCGCGAUCUGCaCCGCc -3'
miRNA:   3'- -CGGugGUAGu---GGUGCUAGACGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 98154 0.72 0.69528
Target:  5'- uGCCGCCGUCGCUgcugACGGcgCUGCgCCGa -3'
miRNA:   3'- -CGGUGGUAGUGG----UGCUa-GACGgGGUg -5'
14611 3' -56.7 NC_003521.1 + 212684 0.71 0.713724
Target:  5'- cGCCGCCGUCGCCAgGGcaaggcuggugggUCggGCCUCGa -3'
miRNA:   3'- -CGGUGGUAGUGGUgCU-------------AGa-CGGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.