miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 5' -52.4 NC_003521.1 + 222048 0.68 0.962146
Target:  5'- --uCGGcGGGGGGCACCAGccgucGCAGCAg -3'
miRNA:   3'- uuuGUC-CCUCUUGUGGUCcu---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 137274 0.68 0.961795
Target:  5'- aGAGCGGGGgccccagcgaccuGGAGCugCGGGuggcGCGGCu -3'
miRNA:   3'- -UUUGUCCC-------------UCUUGugGUCCu---UGUCGu -5'
14611 5' -52.4 NC_003521.1 + 87007 0.69 0.958535
Target:  5'- uGAugAGGGccacgugcuGGAugACCAGGAACAcCAc -3'
miRNA:   3'- -UUugUCCC---------UCUugUGGUCCUUGUcGU- -5'
14611 5' -52.4 NC_003521.1 + 168778 0.69 0.956258
Target:  5'- uGAGCaAGGGucuGCACCAGGAccuggugcaggccacGCGGCGc -3'
miRNA:   3'- -UUUG-UCCCucuUGUGGUCCU---------------UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 162219 0.69 0.954693
Target:  5'- gAGACGGGGGGugguAGCGCCgacggcgcuggcGGGGugGGCGu -3'
miRNA:   3'- -UUUGUCCCUC----UUGUGG------------UCCUugUCGU- -5'
14611 5' -52.4 NC_003521.1 + 7990 0.69 0.954693
Target:  5'- cGGCGGcGGGGGAggUACCGGG-GCAGCGc -3'
miRNA:   3'- uUUGUC-CCUCUU--GUGGUCCuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 48715 0.69 0.954297
Target:  5'- gAGGCcGGGAGAgguggagACGCCGGcGAcgcuGCAGCAc -3'
miRNA:   3'- -UUUGuCCCUCU-------UGUGGUC-CU----UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 7727 0.69 0.950618
Target:  5'- uGggUGGGGAGGGCGgCGcGAGCGGCGg -3'
miRNA:   3'- -UuuGUCCCUCUUGUgGUcCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 28240 0.69 0.950618
Target:  5'- uGACGGaGGaAGAagacgGCGCCgagAGGAACAGCGg -3'
miRNA:   3'- uUUGUC-CC-UCU-----UGUGG---UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 102013 0.69 0.950618
Target:  5'- -cACAGGGcgugguuGAGCACCuGGGccACGGCGc -3'
miRNA:   3'- uuUGUCCCu------CUUGUGGuCCU--UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 128165 0.69 0.950618
Target:  5'- cAGGCAGGGcguGGGgucgugcaGCACCGGGuggcACAGCGu -3'
miRNA:   3'- -UUUGUCCC---UCU--------UGUGGUCCu---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 127038 0.69 0.948059
Target:  5'- uGAAUAGGGAGGA-ACCgAGGAuggagacgcggugccGCGGCAg -3'
miRNA:   3'- -UUUGUCCCUCUUgUGG-UCCU---------------UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 71551 0.69 0.946305
Target:  5'- cAAGCAGuGGuGAGCACCAGaGA--GGCAc -3'
miRNA:   3'- -UUUGUC-CCuCUUGUGGUC-CUugUCGU- -5'
14611 5' -52.4 NC_003521.1 + 95086 0.69 0.946305
Target:  5'- -cGCAGGGGcucGGGCGCCuuGAGCGGCc -3'
miRNA:   3'- uuUGUCCCU---CUUGUGGucCUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 63875 0.69 0.946305
Target:  5'- uGGACgAGGcGGcGCGCCGGGAgcuGCAGCAg -3'
miRNA:   3'- -UUUG-UCCcUCuUGUGGUCCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 65567 0.69 0.945861
Target:  5'- cGAGCAGGacuacgcacgcuacCGCCAGGGACAGCAa -3'
miRNA:   3'- -UUUGUCCcucuu---------GUGGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 100175 0.69 0.941752
Target:  5'- ---uGGGGuAGGGCGCCAGGcGCAGg- -3'
miRNA:   3'- uuugUCCC-UCUUGUGGUCCuUGUCgu -5'
14611 5' -52.4 NC_003521.1 + 36161 0.69 0.941752
Target:  5'- ---aGGaGGAGGACACCccGGACGGCGu -3'
miRNA:   3'- uuugUC-CCUCUUGUGGucCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 215638 0.7 0.936955
Target:  5'- aGGACGGGGcuccgcauGGucGCGgCGGGAGCAGCGa -3'
miRNA:   3'- -UUUGUCCC--------UCu-UGUgGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 43660 0.7 0.936955
Target:  5'- aGAGCAGagaGGAGGAgAggAGGAGCAGCAg -3'
miRNA:   3'- -UUUGUC---CCUCUUgUggUCCUUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.