miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 5' -52.4 NC_003521.1 + 186919 0.67 0.979314
Target:  5'- ---aAGGG-GGGCGCCgguggcGGGGGCGGCGg -3'
miRNA:   3'- uuugUCCCuCUUGUGG------UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 10475 0.67 0.979087
Target:  5'- gGGACGGGGAuaacgGAGCAUgcgccggCGGGGAUGGCGu -3'
miRNA:   3'- -UUUGUCCCU-----CUUGUG-------GUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 88910 0.67 0.976956
Target:  5'- cGAGCAGaGGAgcGAugACCAcGGGcgaGCAGCGa -3'
miRNA:   3'- -UUUGUC-CCU--CUugUGGU-CCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 22692 0.67 0.976956
Target:  5'- uGACGGGGAucagGAuuGCACCAGuuucguGGACAGCc -3'
miRNA:   3'- uUUGUCCCU----CU--UGUGGUC------CUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 221233 0.68 0.97545
Target:  5'- gAAACAGGuguuccagcuugugaGGGAACACCAGc--CAGCAg -3'
miRNA:   3'- -UUUGUCC---------------CUCUUGUGGUCcuuGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 238471 0.68 0.974406
Target:  5'- cGGGCGGGGcGGAgacGCGgcCCAGGGuCAGCAg -3'
miRNA:   3'- -UUUGUCCC-UCU---UGU--GGUCCUuGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 38243 0.68 0.974406
Target:  5'- cGGGCGGGGcGGAgacGCGgcCCAGGGuCAGCAg -3'
miRNA:   3'- -UUUGUCCC-UCU---UGU--GGUCCUuGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 236139 0.68 0.974406
Target:  5'- gGGACGGGGGGGACcgcgcgacgucGCCGgcGGGACcuAGCGg -3'
miRNA:   3'- -UUUGUCCCUCUUG-----------UGGU--CCUUG--UCGU- -5'
14611 5' -52.4 NC_003521.1 + 215468 0.68 0.974406
Target:  5'- ---gAGGGAgccacgaaggcGAAgGCCAGGAGCAGgGa -3'
miRNA:   3'- uuugUCCCU-----------CUUgUGGUCCUUGUCgU- -5'
14611 5' -52.4 NC_003521.1 + 59350 0.68 0.97414
Target:  5'- cGAGCuGGGAuGGgccgucuGCGCCGacuGGGACAGCAu -3'
miRNA:   3'- -UUUGuCCCU-CU-------UGUGGU---CCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 238546 0.68 0.971657
Target:  5'- cAGCGGGuaGAGGugGCCguccuGGGGGCAGUAg -3'
miRNA:   3'- uUUGUCC--CUCUugUGG-----UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 76676 0.68 0.971657
Target:  5'- cGGACuGcGAGGACGCUgGGGGACAGCGg -3'
miRNA:   3'- -UUUGuCcCUCUUGUGG-UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 38319 0.68 0.971657
Target:  5'- cAGCGGGuaGAGGugGCCguccuGGGGGCAGUAg -3'
miRNA:   3'- uUUGUCC--CUCUugUGG-----UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 31450 0.68 0.968702
Target:  5'- -uACGGGGAGGACgACUaugAGGGguucagcucGCAGCGg -3'
miRNA:   3'- uuUGUCCCUCUUG-UGG---UCCU---------UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 177976 0.68 0.968702
Target:  5'- gAGGCGGGGc--ACACCuGGGGCGGUg -3'
miRNA:   3'- -UUUGUCCCucuUGUGGuCCUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 173186 0.68 0.968702
Target:  5'- cAGCAugucuuGGGGGAACACUAGGGugcACAGg- -3'
miRNA:   3'- uUUGU------CCCUCUUGUGGUCCU---UGUCgu -5'
14611 5' -52.4 NC_003521.1 + 215380 0.68 0.968702
Target:  5'- ---gAGGcaGAGGACgGCCAGGAAgGGCAc -3'
miRNA:   3'- uuugUCC--CUCUUG-UGGUCCUUgUCGU- -5'
14611 5' -52.4 NC_003521.1 + 180268 0.68 0.965534
Target:  5'- -cGCAGGGGGAaguagGCGCgCAcguuGAGCAGCAc -3'
miRNA:   3'- uuUGUCCCUCU-----UGUG-GUc---CUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 162304 0.68 0.965205
Target:  5'- gGAACGGGGAGAGCGggGGGAuucccuacuacccGCAGgCGg -3'
miRNA:   3'- -UUUGUCCCUCUUGUggUCCU-------------UGUC-GU- -5'
14611 5' -52.4 NC_003521.1 + 222048 0.68 0.962146
Target:  5'- --uCGGcGGGGGGCACCAGccgucGCAGCAg -3'
miRNA:   3'- uuuGUC-CCUCUUGUGGUCcu---UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.