Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14611 | 5' | -52.4 | NC_003521.1 | + | 91858 | 0.66 | 0.988509 |
Target: 5'- --cCAGGGcGGcGgACCAGGAcgGCGGCGg -3' miRNA: 3'- uuuGUCCC-UCuUgUGGUCCU--UGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 26783 | 0.66 | 0.986988 |
Target: 5'- gGGACGcgcucGGGGGGcCACCgcagguauGGGAACGGCGu -3' miRNA: 3'- -UUUGU-----CCCUCUuGUGG--------UCCUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 145469 | 0.67 | 0.985317 |
Target: 5'- cAAGCAGGGGGGcacucgcacGCugCAGGuGgAGCc -3' miRNA: 3'- -UUUGUCCCUCU---------UGugGUCCuUgUCGu -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 123394 | 0.67 | 0.985317 |
Target: 5'- -uACGGGGAGGgauggugaggAUACgCGGGcACGGCAc -3' miRNA: 3'- uuUGUCCCUCU----------UGUG-GUCCuUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 71292 | 0.67 | 0.985317 |
Target: 5'- cGGCAcGGGccccuGGGGCACCAgcaccuGGGGCGGCGg -3' miRNA: 3'- uUUGU-CCC-----UCUUGUGGU------CCUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 151122 | 0.67 | 0.985317 |
Target: 5'- uGGCGGGGGGAAUAUgGGGAcUAGg- -3' miRNA: 3'- uUUGUCCCUCUUGUGgUCCUuGUCgu -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 78723 | 0.67 | 0.985141 |
Target: 5'- gAGGCAGcGGuAGAGCgGCCAGGAguugucgucgggcACGGCc -3' miRNA: 3'- -UUUGUC-CC-UCUUG-UGGUCCU-------------UGUCGu -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 147754 | 0.67 | 0.983486 |
Target: 5'- gGAAUAGGuGGAAaacgGCCAGGGACGGgAg -3' miRNA: 3'- -UUUGUCCcUCUUg---UGGUCCUUGUCgU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 125936 | 0.67 | 0.983486 |
Target: 5'- uGggUAGGGuugcucgagaAGAGCGCCAcgauGAACAGCGg -3' miRNA: 3'- -UuuGUCCC----------UCUUGUGGUc---CUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 46393 | 0.67 | 0.983486 |
Target: 5'- -cGCGGGGugcguGGGGCgcgcggGCCAGGaAGCGGCGa -3' miRNA: 3'- uuUGUCCC-----UCUUG------UGGUCC-UUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 89709 | 0.67 | 0.982308 |
Target: 5'- cAGCAGaGGAGAGCggguggaagacguggGCaCGGGGGCGGUg -3' miRNA: 3'- uUUGUC-CCUCUUG---------------UG-GUCCUUGUCGu -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 12019 | 0.67 | 0.981488 |
Target: 5'- cGAAgGGaGGGGAACGCuCGGGAcucuuuGCGGUAa -3' miRNA: 3'- -UUUgUC-CCUCUUGUG-GUCCU------UGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 4247 | 0.67 | 0.981488 |
Target: 5'- gAGACGGGGAGGAgGaCgAGaaGGACGGCGg -3' miRNA: 3'- -UUUGUCCCUCUUgU-GgUC--CUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 236339 | 0.67 | 0.981488 |
Target: 5'- cGGACgGGGGAGGACGauaaaagaUCGGGGGCcGCAg -3' miRNA: 3'- -UUUG-UCCCUCUUGU--------GGUCCUUGuCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 4180 | 0.67 | 0.981488 |
Target: 5'- cAGGCAGaGGAGGACucucuCUGGGAGCugaaAGCGg -3' miRNA: 3'- -UUUGUC-CCUCUUGu----GGUCCUUG----UCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 148474 | 0.67 | 0.979314 |
Target: 5'- cGGGCAGgacGGAGggUuCCGGGAGCgaGGCGg -3' miRNA: 3'- -UUUGUC---CCUCuuGuGGUCCUUG--UCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 127861 | 0.67 | 0.979314 |
Target: 5'- cGGGCAGGuuGccCACCAGGAugcGCGGCGu -3' miRNA: 3'- -UUUGUCCcuCuuGUGGUCCU---UGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 57093 | 0.67 | 0.979314 |
Target: 5'- cGACgAGGGAGAuaagagACACgAGGGAC-GCGa -3' miRNA: 3'- uUUG-UCCCUCU------UGUGgUCCUUGuCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 186919 | 0.67 | 0.979314 |
Target: 5'- ---aAGGG-GGGCGCCgguggcGGGGGCGGCGg -3' miRNA: 3'- uuugUCCCuCUUGUGG------UCCUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 185747 | 0.67 | 0.979314 |
Target: 5'- cGAGCGGGuGcgccGGAGCGCCuAGGGGCcGCGa -3' miRNA: 3'- -UUUGUCC-C----UCUUGUGG-UCCUUGuCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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