miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 5' -52.4 NC_003521.1 + 238771 0.66 0.989889
Target:  5'- cGACAGaGGugGGGACACggcaCAGGuAGCAGCGg -3'
miRNA:   3'- uUUGUC-CC--UCUUGUG----GUCC-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 84792 0.66 0.989889
Target:  5'- gAAGCagAGGGAGGGCACgucGGGCAGCu -3'
miRNA:   3'- -UUUG--UCCCUCUUGUGgucCUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 127861 0.67 0.979314
Target:  5'- cGGGCAGGuuGccCACCAGGAugcGCGGCGu -3'
miRNA:   3'- -UUUGUCCcuCuuGUGGUCCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 78723 0.67 0.985141
Target:  5'- gAGGCAGcGGuAGAGCgGCCAGGAguugucgucgggcACGGCc -3'
miRNA:   3'- -UUUGUC-CC-UCUUG-UGGUCCU-------------UGUCGu -5'
14611 5' -52.4 NC_003521.1 + 145469 0.67 0.985317
Target:  5'- cAAGCAGGGGGGcacucgcacGCugCAGGuGgAGCc -3'
miRNA:   3'- -UUUGUCCCUCU---------UGugGUCCuUgUCGu -5'
14611 5' -52.4 NC_003521.1 + 71292 0.67 0.985317
Target:  5'- cGGCAcGGGccccuGGGGCACCAgcaccuGGGGCGGCGg -3'
miRNA:   3'- uUUGU-CCC-----UCUUGUGGU------CCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 220050 0.67 0.979314
Target:  5'- cGACAGcGccAACGCCAGGAaggACAGCAc -3'
miRNA:   3'- uUUGUCcCucUUGUGGUCCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 10475 0.67 0.979087
Target:  5'- gGGACGGGGAuaacgGAGCAUgcgccggCGGGGAUGGCGu -3'
miRNA:   3'- -UUUGUCCCU-----CUUGUG-------GUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 88910 0.67 0.976956
Target:  5'- cGAGCAGaGGAgcGAugACCAcGGGcgaGCAGCGa -3'
miRNA:   3'- -UUUGUC-CCU--CUugUGGU-CCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 236339 0.67 0.981488
Target:  5'- cGGACgGGGGAGGACGauaaaagaUCGGGGGCcGCAg -3'
miRNA:   3'- -UUUG-UCCCUCUUGU--------GGUCCUUGuCGU- -5'
14611 5' -52.4 NC_003521.1 + 125936 0.67 0.983486
Target:  5'- uGggUAGGGuugcucgagaAGAGCGCCAcgauGAACAGCGg -3'
miRNA:   3'- -UuuGUCCC----------UCUUGUGGUc---CUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 57093 0.67 0.979314
Target:  5'- cGACgAGGGAGAuaagagACACgAGGGAC-GCGa -3'
miRNA:   3'- uUUG-UCCCUCU------UGUGgUCCUUGuCGU- -5'
14611 5' -52.4 NC_003521.1 + 148474 0.67 0.979314
Target:  5'- cGGGCAGgacGGAGggUuCCGGGAGCgaGGCGg -3'
miRNA:   3'- -UUUGUC---CCUCuuGuGGUCCUUG--UCGU- -5'
14611 5' -52.4 NC_003521.1 + 186919 0.67 0.979314
Target:  5'- ---aAGGG-GGGCGCCgguggcGGGGGCGGCGg -3'
miRNA:   3'- uuugUCCCuCUUGUGG------UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 46393 0.67 0.983486
Target:  5'- -cGCGGGGugcguGGGGCgcgcggGCCAGGaAGCGGCGa -3'
miRNA:   3'- uuUGUCCC-----UCUUG------UGGUCC-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 151122 0.67 0.985317
Target:  5'- uGGCGGGGGGAAUAUgGGGAcUAGg- -3'
miRNA:   3'- uUUGUCCCUCUUGUGgUCCUuGUCgu -5'
14611 5' -52.4 NC_003521.1 + 123394 0.67 0.985317
Target:  5'- -uACGGGGAGGgauggugaggAUACgCGGGcACGGCAc -3'
miRNA:   3'- uuUGUCCCUCU----------UGUG-GUCCuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 147754 0.67 0.983486
Target:  5'- gGAAUAGGuGGAAaacgGCCAGGGACGGgAg -3'
miRNA:   3'- -UUUGUCCcUCUUg---UGGUCCUUGUCgU- -5'
14611 5' -52.4 NC_003521.1 + 4180 0.67 0.981488
Target:  5'- cAGGCAGaGGAGGACucucuCUGGGAGCugaaAGCGg -3'
miRNA:   3'- -UUUGUC-CCUCUUGu----GGUCCUUG----UCGU- -5'
14611 5' -52.4 NC_003521.1 + 22692 0.67 0.976956
Target:  5'- uGACGGGGAucagGAuuGCACCAGuuucguGGACAGCc -3'
miRNA:   3'- uUUGUCCCU----CU--UGUGGUC------CUUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.