miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 5' -52.4 NC_003521.1 + 57093 0.67 0.979314
Target:  5'- cGACgAGGGAGAuaagagACACgAGGGAC-GCGa -3'
miRNA:   3'- uUUG-UCCCUCU------UGUGgUCCUUGuCGU- -5'
14611 5' -52.4 NC_003521.1 + 58854 0.66 0.988509
Target:  5'- gAAACAGaGAG-ACACCGGGGAaaaaaGGCu -3'
miRNA:   3'- -UUUGUCcCUCuUGUGGUCCUUg----UCGu -5'
14611 5' -52.4 NC_003521.1 + 59350 0.68 0.97414
Target:  5'- cGAGCuGGGAuGGgccgucuGCGCCGacuGGGACAGCAu -3'
miRNA:   3'- -UUUGuCCCU-CU-------UGUGGU---CCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 60694 0.72 0.852642
Target:  5'- -cGCGcGGGGGAC-CCGGGGGCGGCGc -3'
miRNA:   3'- uuUGUcCCUCUUGuGGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 61834 0.73 0.792275
Target:  5'- gGGGCccuGGGAGGGCGCCGcGGAACcGCGg -3'
miRNA:   3'- -UUUGu--CCCUCUUGUGGU-CCUUGuCGU- -5'
14611 5' -52.4 NC_003521.1 + 63875 0.69 0.946305
Target:  5'- uGGACgAGGcGGcGCGCCGGGAgcuGCAGCAg -3'
miRNA:   3'- -UUUG-UCCcUCuUGUGGUCCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 65080 0.73 0.827852
Target:  5'- uGGACAaGGAGAaccgGCGCCAGGAggaagaGCGGCGc -3'
miRNA:   3'- -UUUGUcCCUCU----UGUGGUCCU------UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 65567 0.69 0.945861
Target:  5'- cGAGCAGGacuacgcacgcuacCGCCAGGGACAGCAa -3'
miRNA:   3'- -UUUGUCCcucuu---------GUGGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 70245 0.66 0.991135
Target:  5'- uAGGCAGGGcGAGCuggUgGGGuGCAGCAc -3'
miRNA:   3'- -UUUGUCCCuCUUGu--GgUCCuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 70364 0.66 0.992257
Target:  5'- cGGCGGGGuAGAGC-CgCAGGcGGCGGUAg -3'
miRNA:   3'- uUUGUCCC-UCUUGuG-GUCC-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 71292 0.67 0.985317
Target:  5'- cGGCAcGGGccccuGGGGCACCAgcaccuGGGGCGGCGg -3'
miRNA:   3'- uUUGU-CCC-----UCUUGUGGU------CCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 71551 0.69 0.946305
Target:  5'- cAAGCAGuGGuGAGCACCAGaGA--GGCAc -3'
miRNA:   3'- -UUUGUC-CCuCUUGUGGUC-CUugUCGU- -5'
14611 5' -52.4 NC_003521.1 + 76676 0.68 0.971657
Target:  5'- cGGACuGcGAGGACGCUgGGGGACAGCGg -3'
miRNA:   3'- -UUUGuCcCUCUUGUGG-UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 78723 0.67 0.985141
Target:  5'- gAGGCAGcGGuAGAGCgGCCAGGAguugucgucgggcACGGCc -3'
miRNA:   3'- -UUUGUC-CC-UCUUG-UGGUCCU-------------UGUCGu -5'
14611 5' -52.4 NC_003521.1 + 84792 0.66 0.989889
Target:  5'- gAAGCagAGGGAGGGCACgucGGGCAGCu -3'
miRNA:   3'- -UUUG--UCCCUCUUGUGgucCUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 87007 0.69 0.958535
Target:  5'- uGAugAGGGccacgugcuGGAugACCAGGAACAcCAc -3'
miRNA:   3'- -UUugUCCC---------UCUugUGGUCCUUGUcGU- -5'
14611 5' -52.4 NC_003521.1 + 88910 0.67 0.976956
Target:  5'- cGAGCAGaGGAgcGAugACCAcGGGcgaGCAGCGa -3'
miRNA:   3'- -UUUGUC-CCU--CUugUGGU-CCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 89709 0.67 0.982308
Target:  5'- cAGCAGaGGAGAGCggguggaagacguggGCaCGGGGGCGGUg -3'
miRNA:   3'- uUUGUC-CCUCUUG---------------UG-GUCCUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 90614 0.66 0.991933
Target:  5'- cAGCAGGcuguGGACcugccagaaggcccGCCGGGAGCGGUAg -3'
miRNA:   3'- uUUGUCCcu--CUUG--------------UGGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 91858 0.66 0.988509
Target:  5'- --cCAGGGcGGcGgACCAGGAcgGCGGCGg -3'
miRNA:   3'- uuuGUCCC-UCuUgUGGUCCU--UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.