miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 5' -52.4 NC_003521.1 + 4180 0.67 0.981488
Target:  5'- cAGGCAGaGGAGGACucucuCUGGGAGCugaaAGCGg -3'
miRNA:   3'- -UUUGUC-CCUCUUGu----GGUCCUUG----UCGU- -5'
14611 5' -52.4 NC_003521.1 + 4247 0.67 0.981488
Target:  5'- gAGACGGGGAGGAgGaCgAGaaGGACGGCGg -3'
miRNA:   3'- -UUUGUCCCUCUUgU-GgUC--CUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 7727 0.69 0.950618
Target:  5'- uGggUGGGGAGGGCGgCGcGAGCGGCGg -3'
miRNA:   3'- -UuuGUCCCUCUUGUgGUcCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 7990 0.69 0.954693
Target:  5'- cGGCGGcGGGGGAggUACCGGG-GCAGCGc -3'
miRNA:   3'- uUUGUC-CCUCUU--GUGGUCCuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 10475 0.67 0.979087
Target:  5'- gGGACGGGGAuaacgGAGCAUgcgccggCGGGGAUGGCGu -3'
miRNA:   3'- -UUUGUCCCU-----CUUGUG-------GUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 12019 0.67 0.981488
Target:  5'- cGAAgGGaGGGGAACGCuCGGGAcucuuuGCGGUAa -3'
miRNA:   3'- -UUUgUC-CCUCUUGUG-GUCCU------UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 22692 0.67 0.976956
Target:  5'- uGACGGGGAucagGAuuGCACCAGuuucguGGACAGCc -3'
miRNA:   3'- uUUGUCCCU----CU--UGUGGUC------CUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 23103 0.66 0.992257
Target:  5'- cGGGCGGGGG----GCCGGG-ACGGCAc -3'
miRNA:   3'- -UUUGUCCCUcuugUGGUCCuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 26783 0.66 0.986988
Target:  5'- gGGACGcgcucGGGGGGcCACCgcagguauGGGAACGGCGu -3'
miRNA:   3'- -UUUGU-----CCCUCUuGUGG--------UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 28240 0.69 0.950618
Target:  5'- uGACGGaGGaAGAagacgGCGCCgagAGGAACAGCGg -3'
miRNA:   3'- uUUGUC-CC-UCU-----UGUGG---UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 30913 0.71 0.896514
Target:  5'- cGGCAGGcGAGAGCGguCCuGGGGCAGUc -3'
miRNA:   3'- uUUGUCC-CUCUUGU--GGuCCUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 31450 0.68 0.968702
Target:  5'- -uACGGGGAGGACgACUaugAGGGguucagcucGCAGCGg -3'
miRNA:   3'- uuUGUCCCUCUUG-UGG---UCCU---------UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 36161 0.69 0.941752
Target:  5'- ---aGGaGGAGGACACCccGGACGGCGu -3'
miRNA:   3'- uuugUC-CCUCUUGUGGucCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 37537 0.66 0.991135
Target:  5'- ---gGGGGuGGGCAgCGGGGgucGCGGCGg -3'
miRNA:   3'- uuugUCCCuCUUGUgGUCCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 38243 0.68 0.974406
Target:  5'- cGGGCGGGGcGGAgacGCGgcCCAGGGuCAGCAg -3'
miRNA:   3'- -UUUGUCCC-UCU---UGU--GGUCCUuGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 38319 0.68 0.971657
Target:  5'- cAGCGGGuaGAGGugGCCguccuGGGGGCAGUAg -3'
miRNA:   3'- uUUGUCC--CUCUugUGG-----UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 38544 0.66 0.989889
Target:  5'- cGACAGaGGugGGGACACggcaCAGGuAGCAGCGg -3'
miRNA:   3'- uUUGUC-CC--UCUUGUG----GUCC-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 43660 0.7 0.936955
Target:  5'- aGAGCAGagaGGAGGAgAggAGGAGCAGCAg -3'
miRNA:   3'- -UUUGUC---CCUCUUgUggUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 46393 0.67 0.983486
Target:  5'- -cGCGGGGugcguGGGGCgcgcggGCCAGGaAGCGGCGa -3'
miRNA:   3'- uuUGUCCC-----UCUUG------UGGUCC-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 48715 0.69 0.954297
Target:  5'- gAGGCcGGGAGAgguggagACGCCGGcGAcgcuGCAGCAc -3'
miRNA:   3'- -UUUGuCCCUCU-------UGUGGUC-CU----UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.