miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 5' -52.4 NC_003521.1 + 220915 1.07 0.01087
Target:  5'- gAAACAGGGAGAACACCAGGAACAGCAg -3'
miRNA:   3'- -UUUGUCCCUCUUGUGGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 103137 0.85 0.23893
Target:  5'- ---uGGGGAGAGC-CCAGGGGCAGCAg -3'
miRNA:   3'- uuugUCCCUCUUGuGGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 171445 0.74 0.777346
Target:  5'- gGAGCAGGGGGGugACUAGGGaaaccacgugcgggcGCAcGCAg -3'
miRNA:   3'- -UUUGUCCCUCUugUGGUCCU---------------UGU-CGU- -5'
14611 5' -52.4 NC_003521.1 + 61834 0.73 0.792275
Target:  5'- gGGGCccuGGGAGGGCGCCGcGGAACcGCGg -3'
miRNA:   3'- -UUUGu--CCCUCUUGUGGU-CCUUGuCGU- -5'
14611 5' -52.4 NC_003521.1 + 65080 0.73 0.827852
Target:  5'- uGGACAaGGAGAaccgGCGCCAGGAggaagaGCGGCGc -3'
miRNA:   3'- -UUUGUcCCUCU----UGUGGUCCU------UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 136691 0.72 0.836309
Target:  5'- cGAGCAGGGcgggcccgagcAGGACGCCgccgAGGAugGCAGCGc -3'
miRNA:   3'- -UUUGUCCC-----------UCUUGUGG----UCCU--UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 60694 0.72 0.852642
Target:  5'- -cGCGcGGGGGAC-CCGGGGGCGGCGc -3'
miRNA:   3'- uuUGUcCCUCUUGuGGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 185332 0.72 0.868153
Target:  5'- -cGCcuGGcuGGAGCACCAGGAggACGGCAa -3'
miRNA:   3'- uuUGucCC--UCUUGUGGUCCU--UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 30913 0.71 0.896514
Target:  5'- cGGCAGGcGAGAGCGguCCuGGGGCAGUc -3'
miRNA:   3'- uUUGUCC-CUCUUGU--GGuCCUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 219850 0.71 0.903021
Target:  5'- -uGCGGGcccGAGAGCAUgAGGAuCAGCAu -3'
miRNA:   3'- uuUGUCC---CUCUUGUGgUCCUuGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 184823 0.71 0.903021
Target:  5'- uGGugGGuGGAGAACGCCGuGGAcCGGCu -3'
miRNA:   3'- -UUugUC-CCUCUUGUGGU-CCUuGUCGu -5'
14611 5' -52.4 NC_003521.1 + 198947 0.7 0.921092
Target:  5'- gAGGCAGuGGAGGuuggGCACCAGGcgcGAgAGCGu -3'
miRNA:   3'- -UUUGUC-CCUCU----UGUGGUCC---UUgUCGU- -5'
14611 5' -52.4 NC_003521.1 + 149097 0.7 0.926626
Target:  5'- gGAugGGGGAGggUAggggucggaAGGAGCGGCAc -3'
miRNA:   3'- -UUugUCCCUCuuGUgg-------UCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 147495 0.7 0.926626
Target:  5'- -uACGGGGAGAGgAUCAGGAAgacaaauuUGGCGa -3'
miRNA:   3'- uuUGUCCCUCUUgUGGUCCUU--------GUCGU- -5'
14611 5' -52.4 NC_003521.1 + 207436 0.7 0.931913
Target:  5'- --cCAGGGAGAGCGgCGGcuGGCGGCGu -3'
miRNA:   3'- uuuGUCCCUCUUGUgGUCc-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 98235 0.7 0.936955
Target:  5'- gAGGCGGGGAGGcgggggcggccACGgCGGGcACGGCGa -3'
miRNA:   3'- -UUUGUCCCUCU-----------UGUgGUCCuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 43660 0.7 0.936955
Target:  5'- aGAGCAGagaGGAGGAgAggAGGAGCAGCAg -3'
miRNA:   3'- -UUUGUC---CCUCUUgUggUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 215638 0.7 0.936955
Target:  5'- aGGACGGGGcuccgcauGGucGCGgCGGGAGCAGCGa -3'
miRNA:   3'- -UUUGUCCC--------UCu-UGUgGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 100175 0.69 0.941752
Target:  5'- ---uGGGGuAGGGCGCCAGGcGCAGg- -3'
miRNA:   3'- uuugUCCC-UCUUGUGGUCCuUGUCgu -5'
14611 5' -52.4 NC_003521.1 + 36161 0.69 0.941752
Target:  5'- ---aGGaGGAGGACACCccGGACGGCGu -3'
miRNA:   3'- uuugUC-CCUCUUGUGGucCUUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.