miRNA display CGI


Results 41 - 60 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 18922 0.66 0.868712
Target:  5'- gGGUGGc-GCCgCG-CGCCGgcaauCCGCCc -3'
miRNA:   3'- -UCACCuuCGG-GCuGCGGCagu--GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 182386 0.66 0.868712
Target:  5'- --cGGAAaguucGCCCGGCaGCgcugcggcuuCGUCaACCGCCg -3'
miRNA:   3'- ucaCCUU-----CGGGCUG-CG----------GCAG-UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 220522 0.66 0.868712
Target:  5'- cGUGGAGGUCCaGGuCuCCGUCACguuccucuCGCCc -3'
miRNA:   3'- uCACCUUCGGG-CU-GcGGCAGUG--------GCGG- -5'
14612 5' -59.7 NC_003521.1 + 227635 0.66 0.868712
Target:  5'- --cGGcGGCCCGAgcggcaCGCCugGUCAggacCCGCCu -3'
miRNA:   3'- ucaCCuUCGGGCU------GCGG--CAGU----GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 88060 0.66 0.868712
Target:  5'- --aGGAGGC--GACGCCGUuccgcgCGCUGCCc -3'
miRNA:   3'- ucaCCUUCGggCUGCGGCA------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 80495 0.66 0.867316
Target:  5'- --cGGAGGCCaccgcgccgcccaCGGCuccgaugGCCGUgccCACCGCCu -3'
miRNA:   3'- ucaCCUUCGG-------------GCUG-------CGGCA---GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 56649 0.66 0.864501
Target:  5'- -aUGGAGGa-CGACGCCGcagguaguguugucgUCGCuCGCCc -3'
miRNA:   3'- ucACCUUCggGCUGCGGC---------------AGUG-GCGG- -5'
14612 5' -59.7 NC_003521.1 + 43324 0.66 0.861657
Target:  5'- --cGGAAcgaacacuGCUCcGCGCCGUCcggcCCGCCg -3'
miRNA:   3'- ucaCCUU--------CGGGcUGCGGCAGu---GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 121881 0.66 0.861657
Target:  5'- --cGGGcgcuGGCCCugacggGACGCCGcCGCCcacGCCg -3'
miRNA:   3'- ucaCCU----UCGGG------CUGCGGCaGUGG---CGG- -5'
14612 5' -59.7 NC_003521.1 + 172458 0.66 0.861657
Target:  5'- gAGgGGAGGCagggCCGGCaGCgGUgCGCCGUCg -3'
miRNA:   3'- -UCaCCUUCG----GGCUG-CGgCA-GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 97221 0.66 0.861657
Target:  5'- --aGGcagcAGCCgGugGCCGUCAgcaguCCGCg -3'
miRNA:   3'- ucaCCu---UCGGgCugCGGCAGU-----GGCGg -5'
14612 5' -59.7 NC_003521.1 + 117545 0.66 0.861657
Target:  5'- --cGGA--CCUGACGCUGUCGUCGCUc -3'
miRNA:   3'- ucaCCUucGGGCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 127283 0.66 0.861657
Target:  5'- uGGUGGucGuCCCGGCGCgaGggaucccaGCCGCUg -3'
miRNA:   3'- -UCACCuuC-GGGCUGCGg-Cag------UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 211786 0.66 0.861657
Target:  5'- --aGGaAAGCCCGGaaCCGUguCCGUCg -3'
miRNA:   3'- ucaCC-UUCGGGCUgcGGCAguGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 107446 0.66 0.861657
Target:  5'- uGGUGGGuAGCgUGACGCUGgCAUuuuugcuaaCGCCg -3'
miRNA:   3'- -UCACCU-UCGgGCUGCGGCaGUG---------GCGG- -5'
14612 5' -59.7 NC_003521.1 + 73762 0.66 0.861657
Target:  5'- uGUGGGccGGCaCCGGCGUcaugagcgccaCGcCGCUGCCc -3'
miRNA:   3'- uCACCU--UCG-GGCUGCG-----------GCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 54158 0.66 0.861657
Target:  5'- -uUGGAgAGgCCGcCGCCuccGcCACCGCCg -3'
miRNA:   3'- ucACCU-UCgGGCuGCGG---CaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 236198 0.66 0.861657
Target:  5'- cGUGGGAGCCacguCGAUGCuaCGUCaaaccACCGUg -3'
miRNA:   3'- uCACCUUCGG----GCUGCG--GCAG-----UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 233426 0.66 0.861657
Target:  5'- cGGUGGcuccgacGGCCuCGACGCgGUC-CCuucugGCCa -3'
miRNA:   3'- -UCACCu------UCGG-GCUGCGgCAGuGG-----CGG- -5'
14612 5' -59.7 NC_003521.1 + 137059 0.66 0.861657
Target:  5'- --aGGcaccGCCCGGCcccuGCUGUCuuCCGCCa -3'
miRNA:   3'- ucaCCuu--CGGGCUG----CGGCAGu-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.